Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 671,105 – 671,217 |
Length | 112 |
Max. P | 0.561163 |
Location | 671,105 – 671,217 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 94.64 |
Mean single sequence MFE | -32.76 |
Consensus MFE | -28.66 |
Energy contribution | -28.90 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -1.21 |
Structure conservation index | 0.87 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.561163 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 671105 112 - 22407834 UCUUGACUCGCGGGCCCAGCAAACAAAGACAGACACCAGAACAAGACCUGGAUCUGUAUGUAGACCUGAGGGCUGGGGCUAUGGGACAGAACCAGAAAACUGGCCAAUGCUG ..(((.((((..(.((((((..(((...(((((..((((........)))).))))).)))...((...)))))))).)..)))).)))..((((....))))......... ( -36.00) >DroSec_CAF1 59443 112 - 1 UCUUGACUCGCGGGCCCAGCAAACAAAGACAGACACCAGAACAAGACCUGGAUCUGUAUGUAGACCUGAGGGCUGGGUCUAUGGGACAGAACCAGAAAACUGGCCAAUGCUG ..(((.((((..((((((((..(((...(((((..((((........)))).))))).)))...((...))))))))))..)))).)))..((((....))))......... ( -37.90) >DroSim_CAF1 64114 104 - 1 UCUUGACUCGCGGGCCCAGCAAACAAAGACAGACACCAGAACAAGACCUGGAUCUGUAUGUAGACCUGAGGGCUGGGGCUAUGGGACAGAACCAGAAA--------AUGCUG ..(((.((((..(.((((((..(((...(((((..((((........)))).))))).)))...((...)))))))).)..)))).)))...(((...--------...))) ( -32.50) >DroEre_CAF1 68401 112 - 1 UCUUGACUCGCGGGCCCUGCAAACAAAGACAGACACCAGAACAAGACCUGGAUCUGUAUGUAGACCUGAGGGCUGGGGUUAUGGGACAGAAACAGAAAACUGGCAAAUGCUG ((.((((((.(((.((((.((.(((...(((((..((((........)))).))))).))).....))))))))))))))).))........(((....)))((....)).. ( -28.30) >DroYak_CAF1 64245 112 - 1 UCUUGACUCGCGGGCCCUGCAAACAAAGACAGACACCAGAACAAGACCUGGAUCUGUAUGUAGACCUGAAGGCUGGGGCUAUGGGACAGAAACAGAAAACUGGCAAAUGCUG ..(((.((((..((((((....(((...(((((..((((........)))).))))).)))((.((....)))))))))).)))).)))...(((....)))((....)).. ( -29.10) >consensus UCUUGACUCGCGGGCCCAGCAAACAAAGACAGACACCAGAACAAGACCUGGAUCUGUAUGUAGACCUGAGGGCUGGGGCUAUGGGACAGAACCAGAAAACUGGCAAAUGCUG ..(((.((((..(.((((((..(((...(((((..((((........)))).))))).)))...(.....))))))).)..)))).)))....................... (-28.66 = -28.90 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:39 2006