Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,253,596 – 6,253,705 |
Length | 109 |
Max. P | 0.619740 |
Location | 6,253,596 – 6,253,705 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 94.05 |
Mean single sequence MFE | -25.10 |
Consensus MFE | -21.50 |
Energy contribution | -22.18 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.06 |
Mean z-score | -1.29 |
Structure conservation index | 0.86 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.619740 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6253596 109 - 22407834 UUAAGUUGGAGCACUCAAAUUUGAUUGGCCGCCGCCAACUUUUCCC-CCUCAAAUUUUGGCCGGUCUUUAAUGGCAUCAUAAAGCUGUUAGCAAAUAUUAGGUGCAUAUU ..........((((..(((((((...(((((..(((((..(((...-....)))..)))))))))).((((((((........))))))))))))).))..))))..... ( -27.90) >DroSec_CAF1 89760 106 - 1 UUAAGUUGGAGCACUCAAAUUUGAUUGGCC---GCCAACUUUUCCC-CCUCAAAUUUUGGCCGGUCUUUAAUGGCAUCAUAAAGCUGUUAGCAAAUAUUAGGUGCAUAUU ..........((((..(((((((...((((---(((((..(((...-....)))..)))).))))).((((((((........))))))))))))).))..))))..... ( -26.90) >DroSim_CAF1 104444 106 - 1 UUAAGUUGGAGCACUCAAAUUUGAUUGGCC---GCCAACUUUUCCC-CCUCAAAUUUUGGCCGGUCUUUAAUGGCAUCAUAAAGCUGUUAGCAAAUAUUAGGUGCAUAUU ..........((((..(((((((...((((---(((((..(((...-....)))..)))).))))).((((((((........))))))))))))).))..))))..... ( -26.90) >DroEre_CAF1 89105 107 - 1 UUAAGUUGGAGCUUUCAAAUUUGAUUCGCC---GCCAACUUUCACCCCCUCAAAUUUUGGCUGGUCUUUAAUGGCAUCAUAAAGCUGUUGGCAAAUAUUAGGUGCAUAUU ..(((((((.((..(((....)))...)).---.))))))).((((.((.........))...(((...((((((........)))))))))........))))...... ( -19.50) >DroYak_CAF1 102120 106 - 1 ACAAGUUGGAGCUCUCAAAUUUGAUUGGCC---GCCAACUUUUACC-CCUCAAAUUUUGGCCGGUCUUUAAUGGGCUCAUAAAGCUGUUAGCAAAUAUUAGGUGCAUAUU ...((((.((((((......((((..((((---(((((..(((...-....)))..)))).))))).)))).))))))....))))....(((.........)))..... ( -24.30) >consensus UUAAGUUGGAGCACUCAAAUUUGAUUGGCC___GCCAACUUUUCCC_CCUCAAAUUUUGGCCGGUCUUUAAUGGCAUCAUAAAGCUGUUAGCAAAUAUUAGGUGCAUAUU ..........((((..(((((((...((((...(((((..(((........)))..))))).)))).((((((((........))))))))))))).))..))))..... (-21.50 = -22.18 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:37 2006