Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,232,665 – 6,232,776 |
Length | 111 |
Max. P | 0.987187 |
Location | 6,232,665 – 6,232,776 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 96.95 |
Mean single sequence MFE | -38.86 |
Consensus MFE | -35.88 |
Energy contribution | -36.08 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.78 |
Structure conservation index | 0.92 |
SVM decision value | 2.07 |
SVM RNA-class probability | 0.987187 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6232665 111 + 22407834 CCAAUACUCCACUAAUUGCUAGGCUUAAUAGGCAUUAAAAGCAAAUGCCCGGCAGCAGCAACAACGGCGCCCGUGUCCUGGGACAGGACAAUGCCCAGCUGGGCCA-GCGCU ...............(((((..(((.....((((((.......)))))).)))...)))))....(((((...(((((((...)))))))..((((....))))..-))))) ( -36.60) >DroSec_CAF1 69215 111 + 1 CCAAUACUUCACUAAUUGCUAGGCUUAAUAGGCAUUAAAAGCAAAUGCCCGGCAGCGGCAACAACGGUGCCCGUGUCCUGGGACAGGACAAUGCCCAGCUGGGCCC-GCGCU ...............(((((..(((.....)))......)))))..(((((((.(.((((...((((...))))((((((...))))))..))))).)))))))..-..... ( -37.40) >DroSim_CAF1 82335 112 + 1 CCAAUACUUCACUAAUUGCUAGGCUUAAUAGGCAUUAAAAGCAAAUGCCCGGCAGCGGCAACAACGGCGCCCGUGUCCUGGGACAGGACAAUGCCCAGCUGGGCCCUGCGCU .................((...(((.....))).......(((...(((((((.(.((((...((((...))))((((((...))))))..))))).)))))))..))))). ( -39.00) >DroEre_CAF1 66733 111 + 1 CCAAUACUUCACUAAUUGCUAGGCUUAAUAGGCAUUAAAAGCAAAUGCCCGGCAGCGGCAACAACGGCGGCCGUGUCCUGGGACAGGACAAUGCCCAGCUGGGCCG-GCGGU ..............((((((.((((((...((((((.......)))))).(((((((((..(....)..)))))((((((...))))))..))))....)))))))-))))) ( -41.30) >DroYak_CAF1 80779 111 + 1 CCAAUACUUCACUAAUUGCUAGGCUUAAUAGGCAUUAAAAGCAAAUGCCCGGCAGCGGCAACAACGGCGCCCGUGUCCUGGGACAGGACAAUGCCCAGCUGGGCCA-GCGGU ..............((((((.((((.....((((((.......))))))...(((((....)...((.((...(((((((...)))))))..)))).)))))))))-))))) ( -40.00) >consensus CCAAUACUUCACUAAUUGCUAGGCUUAAUAGGCAUUAAAAGCAAAUGCCCGGCAGCGGCAACAACGGCGCCCGUGUCCUGGGACAGGACAAUGCCCAGCUGGGCCA_GCGCU ...............(((((..(((.....)))......)))))..(((((((.(.((((...((((...))))((((((...))))))..))))).)))))))........ (-35.88 = -36.08 + 0.20)
Location | 6,232,665 – 6,232,776 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 96.95 |
Mean single sequence MFE | -41.60 |
Consensus MFE | -35.90 |
Energy contribution | -36.30 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.36 |
Structure conservation index | 0.86 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.565322 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6232665 111 - 22407834 AGCGC-UGGCCCAGCUGGGCAUUGUCCUGUCCCAGGACACGGGCGCCGUUGUUGCUGCUGCCGGGCAUUUGCUUUUAAUGCCUAUUAAGCCUAGCAAUUAGUGGAGUAUUGG ..(((-(((....(((((((..(((((((...)))))))..(((((.((....)).)).)))(((((((.......))))))).....)))))))..))))))......... ( -42.20) >DroSec_CAF1 69215 111 - 1 AGCGC-GGGCCCAGCUGGGCAUUGUCCUGUCCCAGGACACGGGCACCGUUGUUGCCGCUGCCGGGCAUUUGCUUUUAAUGCCUAUUAAGCCUAGCAAUUAGUGAAGUAUUGG .((((-((((((....))))..(((((((((....)))).))))))))).(((((.(((...(((((((.......)))))))....)))...)))))..)).......... ( -40.60) >DroSim_CAF1 82335 112 - 1 AGCGCAGGGCCCAGCUGGGCAUUGUCCUGUCCCAGGACACGGGCGCCGUUGUUGCCGCUGCCGGGCAUUUGCUUUUAAUGCCUAUUAAGCCUAGCAAUUAGUGAAGUAUUGG ..(((.(....).(((((((..(((((((...)))))))..(((((.((....)).)).)))(((((((.......))))))).....))))))).....)))......... ( -40.50) >DroEre_CAF1 66733 111 - 1 ACCGC-CGGCCCAGCUGGGCAUUGUCCUGUCCCAGGACACGGCCGCCGUUGUUGCCGCUGCCGGGCAUUUGCUUUUAAUGCCUAUUAAGCCUAGCAAUUAGUGAAGUAUUGG .((((-((((((....))))..(((((((...)))))))))))(((....(((((.(((...(((((((.......)))))))....)))...)))))..))).......)) ( -42.60) >DroYak_CAF1 80779 111 - 1 ACCGC-UGGCCCAGCUGGGCAUUGUCCUGUCCCAGGACACGGGCGCCGUUGUUGCCGCUGCCGGGCAUUUGCUUUUAAUGCCUAUUAAGCCUAGCAAUUAGUGAAGUAUUGG ..(((-(((....(((((((..(((((((...)))))))..(((((.((....)).)).)))(((((((.......))))))).....)))))))..))))))......... ( -42.10) >consensus AGCGC_GGGCCCAGCUGGGCAUUGUCCUGUCCCAGGACACGGGCGCCGUUGUUGCCGCUGCCGGGCAUUUGCUUUUAAUGCCUAUUAAGCCUAGCAAUUAGUGAAGUAUUGG .............(((((((..(((((((...)))))))..(((((.((....)).)).)))(((((((.......))))))).....)))))))................. (-35.90 = -36.30 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:34 2006