Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,227,259 – 6,227,368 |
Length | 109 |
Max. P | 0.983994 |
Location | 6,227,259 – 6,227,368 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 92.97 |
Mean single sequence MFE | -32.26 |
Consensus MFE | -26.68 |
Energy contribution | -26.96 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.06 |
Mean z-score | -2.17 |
Structure conservation index | 0.83 |
SVM decision value | 1.96 |
SVM RNA-class probability | 0.983994 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6227259 109 + 22407834 CUUUCAUGCUGCUCCUGGGCUCAGUUGGUGGCCAACGA--GGUCCUAUCUGCGCUGCAACU-----ACGUGCGGCAACAUAUAAAAUUUGCAUUAAAAUUACUUUGAUUGCAAAUU ..........((....(((((..(((((...)))))..--))))).....))((((((...-----...)))))).........(((((((((((((.....))))).)))))))) ( -32.00) >DroSec_CAF1 63756 111 + 1 CUUUCAUGCUGCUCCUGGGCUCAGUUGGUGGCCAACGAGAGGUCCUAUCUGCGCUGCAACU-----ACGUGCGGCAACAUAUAAAAUUUGCAUUAAAAUUACUUUGAUUGCAAAUU ......((((((.(.(((((.(((.(((.((((.......))))))).))).)).....))-----).).))))))........(((((((((((((.....))))).)))))))) ( -30.90) >DroSim_CAF1 76942 111 + 1 CUUUCAUGCUGCUCCUGGGCUCAGUUGGUGGCCAACGAGAGGUCCUAUCUGCGCUGCAACU-----ACGUGCGGCAACAUAUAAAAUUUGCAUUAAAAUUACUUUGAUUGCAAAUU ......((((((.(.(((((.(((.(((.((((.......))))))).))).)).....))-----).).))))))........(((((((((((((.....))))).)))))))) ( -30.90) >DroEre_CAF1 60870 106 + 1 CUUUCACG---CUUCUGGGCCCAGUUGGUGGCCAACGC--GGUGCUAUCUGCGCUGCAACU-----ACGUGCGGCAACAUAUAAAAUUUGCAUUAAAAUUACUUUGAUUGCAAAUU ....((((---......(((((.....).))))...((--(((((.....)))))))....-----.)))).(....)......(((((((((((((.....))))).)))))))) ( -31.90) >DroYak_CAF1 75411 114 + 1 CUUUCAGGCUGCUCCUGGGCUCAGUUGGUGGCCAACGC--GGUGCUAUCUGCGCUGCAACUACUAUACGUGCAGCUACAUAUAAAAUUUGCAUUAAAAUUACUUUGAUUGCAAAUU ......((((((.(.(((.....(((((...)))))((--(((((.....))))))).....)))...).))))))........(((((((((((((.....))))).)))))))) ( -35.60) >consensus CUUUCAUGCUGCUCCUGGGCUCAGUUGGUGGCCAACGA__GGUCCUAUCUGCGCUGCAACU_____ACGUGCGGCAACAUAUAAAAUUUGCAUUAAAAUUACUUUGAUUGCAAAUU ..........((....(((((..(((((...)))))....))))).....))((((((.(........))))))).........(((((((((((((.....))))).)))))))) (-26.68 = -26.96 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:28 2006