Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 86,474 – 86,593 |
Length | 119 |
Max. P | 0.804799 |
Location | 86,474 – 86,593 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.55 |
Mean single sequence MFE | -33.49 |
Consensus MFE | -21.93 |
Energy contribution | -22.40 |
Covariance contribution | 0.47 |
Combinations/Pair | 1.08 |
Mean z-score | -1.62 |
Structure conservation index | 0.65 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.804799 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 86474 119 + 22407834 ACA-AACAGACAAAUUGCCAAUAUGUCUGGCGACAUCGUCGUCCCAAAUUCGCCAUUGCGGGCAAAGUGCUUGGCCGACAUAUGCAACACAAGACGAAAGUUGGAGUACGCUGGCGACAC ...-..........(((((((((((((.((((((...))))))........((((..(((.......))).)))).)))))))((.......(((....))).......))))))))... ( -33.64) >DroPse_CAF1 78429 119 + 1 AGU-CACACACAAAUUGCCAAUAUGUCUGGCGACGUCGUCGUCCUCAAUUCACUAGAGCGGGCAAAGUGCCUGUUUGACAUAUGCGUCACAGAACCCAGGCAGACAUACGGCGGCGACAA .((-(.........((((((.......)))))).(((((((((((...(((....((((((((.....))))))))(((......)))...)))...))).......))))))))))).. ( -38.51) >DroEre_CAF1 66003 119 + 1 ACA-AACAGACAAAUUGCCAAUAUGUCUGGCGACAUUGUCGUCCCAAAUUCGCCAUUGCGGGCAAAGUGCUUGGCCGACAUAUGCAACACAAAACGAAAGUUGGAGUACGCUGGCGACAC ...-..........(((((((((((((((((((..(((......)))..))))))....((.(((.....))).)))))))))((.......(((....))).......))))))))... ( -34.64) >DroYak_CAF1 59085 119 + 1 ACA-AACAGACAAAUUGCCAAUAUGUCUGGCGACAUCGUCGUCCCAAAUUCGCCAUUGCGGGCAAAGUGCUUGGCCGACAUAUGCAACACAAAACGAAAGUUGGAGUACGCUGGCGACAC ...-..........(((((((((((((.((((((...))))))........((((..(((.......))).)))).)))))))((.......(((....))).......))))))))... ( -33.24) >DroAna_CAF1 68977 105 + 1 GCAGAACAGACAAAUUGCCAAUAUGUCUGGCGACAUCGUCAUCCCCAAUUCAUCCCAGAAGCCA-----CUU----GACAUAUGCAUCCCAUCCCC------GAGCUACAAUGGCGACAA ..............((((((((((((((((((((...)))........(((......)))))))-----...----)))))))((.((........------)))).....))))))... ( -22.40) >DroPer_CAF1 79431 119 + 1 AGU-CACACACAAAUUGCCAAUAUGUCUGGCGACGUCGUCGUCCUCAAUUCACUAGAGCGGGCAAAGUGCCUGUUUGACAUAUGCGUCACAGAACCCAGGCAGACAUACGGCGGCGACAA .((-(.........((((((.......)))))).(((((((((((...(((....((((((((.....))))))))(((......)))...)))...))).......))))))))))).. ( -38.51) >consensus ACA_AACAGACAAAUUGCCAAUAUGUCUGGCGACAUCGUCGUCCCAAAUUCACCAUAGCGGGCAAAGUGCUUGGCCGACAUAUGCAACACAAAACCAAAGUUGAAGUACGCUGGCGACAA ..............(((((.(((((((.((((((...))))))...............(((((.....)))))...)))))))...........(....)............)))))... (-21.93 = -22.40 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:29 2006