Locus 2298

Sequence ID 2L_DroMel_CAF1
Location 6,217,416 – 6,217,507
Length 91
Max. P 0.976396
window3689

overview

Window 9

Location 6,217,416 – 6,217,507
Length 91
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 69.90
Mean single sequence MFE -25.00
Consensus MFE -12.53
Energy contribution -12.92
Covariance contribution 0.39
Combinations/Pair 1.20
Mean z-score -2.12
Structure conservation index 0.50
SVM decision value 1.77
SVM RNA-class probability 0.976396
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6217416 91 + 22407834
ACUUACUUAGCCCAUUUA-GCUGACUCCACGCC-----------CUCGCCUUCGUCCUGGCCA--A-AAC-----GCUCUGGUCAGGGCUAAUCCUUGGAGCAUGUCAGAC
.((.(((((((.......-)))))(((((.((.-----------...))....((((((((((--.-...-----....)))))))))).......)))))...)).)).. ( -27.30)
>DroSec_CAF1 54002 91 + 1
ACUUACUUAGCCCAUUUA-GCUGACUCCGCGCC-----------CUCGCAUUCGUCCUGGCCA--A-AAC-----CCUCUGGUCAGGGCUAAUCCUUGGAGCACGUCAGAC
.((.(((((((.......-)))))(((((((..-----------..)))....((((((((((--.-...-----....))))))))))........))))...)).)).. ( -29.90)
>DroSim_CAF1 65640 91 + 1
ACUUACUUAGCCCAUUUA-GCUGACUCCACGCC-----------CUCGCCUUCGUCCUGGCCA--A-AAC-----CCACUGGUCAGGGCUAAUCCUUGGAGCAUGUCAGAC
.((.(((((((.......-)))))(((((.((.-----------...))....((((((((((--.-...-----....)))))))))).......)))))...)).)).. ( -27.30)
>DroEre_CAF1 52799 76 + 1
ACUUACUCAACCCAUU---------------U------------GGCUUCUUCGUCCUGGCCA--A-AAC-----GCACUGGUCAGGGCUAAUCCUUGAAGCAUGGCAGAC
...........((((.---------------.------------.(((((...((((((((((--.-...-----....))))))))))........)))))))))..... ( -23.70)
>DroYak_CAF1 65476 78 + 1
ACUUACUCCACCCACG---------------CC-----------UUCGUCUUCGUCCUGGCCA--AAAAC-----GCACUGGUCAGGGCUAAUCCUUGAAGCAUGUCAGAC
...............(---------------(.-----------((((.....((((((((((--.....-----....)))))))))).......))))))......... ( -19.70)
>DroAna_CAF1 25178 111 + 1
AUUUUCUUAGCCUAUUUACGGUCCCCCCACAACAUUAUUCAGGGCUGUCUUUCACCGUGAAAAUAAAAUUGUUCAAGGCUGGUCAGGGCUAAUCCUUAAAGCAUGUCUGGC
......(((((((.....(((((.....((((..(((((((.((.((.....)))).)))..))))..))))....)))))....)))))))................... ( -22.10)
>consensus
ACUUACUUAGCCCAUUUA_GCUGACUCCACGCC___________CUCGCCUUCGUCCUGGCCA__A_AAC_____GCACUGGUCAGGGCUAAUCCUUGAAGCAUGUCAGAC
.....................................................((((((((((................))))))))))...................... (-12.53 = -12.92 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:22 2006