Locus 2296

Sequence ID 2L_DroMel_CAF1
Location 6,214,578 – 6,214,685
Length 107
Max. P 0.571022
window3685

overview

Window 5

Location 6,214,578 – 6,214,685
Length 107
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 81.22
Mean single sequence MFE -23.98
Consensus MFE -15.13
Energy contribution -16.47
Covariance contribution 1.33
Combinations/Pair 1.00
Mean z-score -1.63
Structure conservation index 0.63
SVM decision value 0.07
SVM RNA-class probability 0.571022
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6214578 107 + 22407834
UUGUCCAUGUUUAUUUAUAACUUGCAAUUGUAAUUAGGAUUACUUUUUUACUUAUUUGCACAGUUGUUGGAGUGCCUC--------GCCAAAGGACAACAAAGCCCAAGGACGAG
((((((...........((((((((((..((((..(((....)))..))))....))))).)))))((((.((.(((.--------.....)))........)))))))))))). ( -25.00)
>DroPse_CAF1 83590 96 + 1
UUGUCCAUGUUUAUUUAUAACUUGCAAUUGUAAUUAGGAUUACUU-UUUACUUAUUUGCAUAGUUGUUGGAGUGCCUU---CUACGACCAAAGGACAA---------------GG
((((((...........((((((((((..((((..((.....)).-.))))....))))).)))))((((.(((....---.)))..)))).))))))---------------.. ( -24.30)
>DroSim_CAF1 62520 106 + 1
UUGUCCAUGUUUAUUUAUAACUUGCAAUUGUAAUUAGGAUUACUU-UUUACUUAUUUGCACAGUUCUUGGAGUGCCUC--------GCCAAAGGACAACAAAGCCCAAGGACGAG
((((((.((.............(((((..((((..((.....)).-.))))....)))))..((((((((.(.....)--------.)).)))))).........)).)))))). ( -24.60)
>DroYak_CAF1 62608 106 + 1
UUGUCCAUGUUUAUUUAUAACUUGCAAUUGUAAUUAGGAUUACUU-UUUUCUUAUUUGCACAGUUGUUGGAGUGCCUC--------GCUAAAGGACAACAAAACCCAAGGACGAG
((((((.((...........((.((((((((((.(((((......-...))))).)))))..))))).)).((.(((.--------.....)))...))......)).)))))). ( -22.80)
>DroAna_CAF1 22307 103 + 1
UUGGCCAUGUUUAUUUAUAACUUGCAAUUGUAAUUAGGAUUACUU-UUUACUUAUUUGCACAGCC--UGCCAGUCCUU--------GCCG-AGGACAAUAACGAGCCACAACGAG
.(((((................(((((..((((..((.....)).-.))))....))))).....--.....((((((--------...)-)))))......).))))....... ( -21.80)
>DroPer_CAF1 84207 99 + 1
UUGUCCAUGUUUAUUUAUAACUUGCAAUUGUAAUUAGGAUUACUU-UUUACUUAUUUGCACAGUUGUUGGAGUGCCUUCUUCUACGACCAAAGGACAA---------------GG
((((((................(((((..((((..((.....)).-.))))....)))))..(((((.((((......)))).)))))....))))))---------------.. ( -25.40)
>consensus
UUGUCCAUGUUUAUUUAUAACUUGCAAUUGUAAUUAGGAUUACUU_UUUACUUAUUUGCACAGUUGUUGGAGUGCCUC________GCCAAAGGACAACAAAGCCCAAGGACGAG
((((((..........(((((((((((..((((..((.....))...))))....))))).)))))).((....))................))))))................. (-15.13 = -16.47 +   1.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:19 2006