Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,213,078 – 6,213,175 |
Length | 97 |
Max. P | 0.989498 |
Location | 6,213,078 – 6,213,175 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 81.32 |
Mean single sequence MFE | -16.90 |
Consensus MFE | -15.60 |
Energy contribution | -15.60 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.03 |
Structure conservation index | 0.92 |
SVM decision value | 2.17 |
SVM RNA-class probability | 0.989498 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6213078 97 - 22407834 CAGACUGCUGCUCGCUCCAAUCUGCAGCUCCAGAUUCGAGUGUGUUAAUUGCUCACCUUCUGAUCCCUCCCUCAGAUCCCCCCCCCCCCUCUCAAAC ......((.((.(((((.((((((......)))))).))))).)).....))......(((((........)))))..................... ( -19.30) >DroSec_CAF1 49672 79 - 1 CAGACUGCUGCUCGCUCCAAUCUGCAGCUCCAGAUUCGAGUGUGUUAAUUGCUCACCUCCUGAUCAC------------------CCCUUUUCUAAC (((.(((..(((.((........)))))..)))....(((.(((.........))))))))).....------------------............ ( -15.70) >DroSim_CAF1 61026 78 - 1 CAGACUGCUGCUCGCUCCAAUCUGCAGCUCCAGAUUCGAGUGUGUUAAUUGCUCACCUCCUGAUCCC------------------CCCU-UUCCACC (((.(((..(((.((........)))))..)))....(((.(((.........))))))))).....------------------....-....... ( -15.70) >consensus CAGACUGCUGCUCGCUCCAAUCUGCAGCUCCAGAUUCGAGUGUGUUAAUUGCUCACCUCCUGAUCCC__________________CCCUUUUCAAAC (((...((.((.(((((.((((((......)))))).))))).)).....)).......)))................................... (-15.60 = -15.60 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:18 2006