Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,196,039 – 6,196,138 |
Length | 99 |
Max. P | 0.648665 |
Location | 6,196,039 – 6,196,138 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 81.93 |
Mean single sequence MFE | -22.40 |
Consensus MFE | -15.78 |
Energy contribution | -16.03 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.18 |
Mean z-score | -1.62 |
Structure conservation index | 0.70 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.648665 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6196039 99 - 22407834 UACUAC---CUCGCCAUUCGGUUUAUAUUUCAAUUAAGUU-UUACAUGCUUGAUUGCAUUUCGGCUGCCUUAAUGCCUGGCCAUUACUCAUGGGCCAGCUACC ......---...(((....))).........((((((((.-......))))))))(((((..((...))..)))))((((((..........))))))..... ( -21.30) >DroGri_CAF1 8552 98 - 1 UACAAA---UACGUUUUUCGGUUUAUAUUUCAAUUAAGUU-UUACAUGCUUGAUUGCAUUUUGGGGGCCUUAAUGUUUGCCCAUUAUUCAUCGGCU-GUGACU ......---...(((...((((..((....(((((((((.-......)))))))))........((((..........)))).......))..)))-).))). ( -18.60) >DroEre_CAF1 31877 99 - 1 UACCAC---UUCGGCUCUCGGUUUAUAUUUCAAUUAAGUU-UUACAUGCUUGAUUGCAUUUCGGCUGCCUUAAUGCCCGGCCAUUACUCAUGGGCCUGCUACC ......---...(((((..(((........(((((((((.-......)))))))))......(((((..........)))))...)))...)))))....... ( -22.70) >DroWil_CAF1 15470 99 - 1 UACAAA---UACGUUUUUCGGUUUAUAUUUCAAUUAAGUU-UUACAUGCUUGAUUGCAUUUUGGGGGCCUUAAUGUUUGGCCAUUAUUCAUGGGCCUGUGACU ......---...(((....(((((((....(((((((((.-......))))))))).........((((.........)))).......)))))))...))). ( -21.70) >DroYak_CAF1 43699 102 - 1 UACAACUACCUCGGCUCUCGGUUUAUAUUUCAAUUAAGUU-UUACAUGCUUGAUUGCAUUUCGGCUGCCUUAAUGCCCGGCCAUUACUCAUGGGCCUGCUACC ............(((((..(((........(((((((((.-......)))))))))......(((((..........)))))...)))...)))))....... ( -22.70) >DroAna_CAF1 4575 100 - 1 UAUUAC---CAUAUUUUUCGGUUUAAAUUUCAAUUAAGCCCGUACAUGCUUGAUUGCAUCGUGGCUGCCCUAAUGUCGGGGCAUCACUCAUGGGCCCCUAACU ......---..........((((((.....(((((((((........)))))))))....((((.((((((......))))))))))...))))))....... ( -27.40) >consensus UACAAC___CACGUCUUUCGGUUUAUAUUUCAAUUAAGUU_UUACAUGCUUGAUUGCAUUUCGGCUGCCUUAAUGCCUGGCCAUUACUCAUGGGCCUGCUACC ...................(((((((....(((((((((........)))))))))......((((((......))..)))).......)))))))....... (-15.78 = -16.03 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:17 2006