Locus 2292

Sequence ID 2L_DroMel_CAF1
Location 6,184,726 – 6,184,832
Length 106
Max. P 0.907822
window3679 window3680

overview

Window 9

Location 6,184,726 – 6,184,832
Length 106
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 90.16
Mean single sequence MFE -41.30
Consensus MFE -31.44
Energy contribution -32.16
Covariance contribution 0.72
Combinations/Pair 1.10
Mean z-score -2.20
Structure conservation index 0.76
SVM decision value 1.06
SVM RNA-class probability 0.907822
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6184726 106 + 22407834
ACAAAGGUUAAAGAUGGGAAUGGCCGGUUGGCCCGCCAGAGUCGCAGCUGCAUUUGCACACUGAACCCGAAAACCGGGGGCG--CGCGAUUUCACAUUGAACCCUU-UG
.((((((.....((((((...((((....))))..)).(((((((.(((((....)))....(..((((.....))))..))--))))))))..))))....))))-)) ( -38.90)
>DroSec_CAF1 21027 108 + 1
ACAAAGGUUAAAGAUGGGAAUGGCCGGUUGGCCCGCCUGAGUCGCAGCUGCAUUUGCACACUGAACCCGAAAACCGGGGGCGCGCGCGAUUCCACAUCGAACCCUU-UG
.((((((.....((((((...((((....))))..)).(((((((.(((((....)))....(..((((.....))))..)))..)))))))..))))....))))-)) ( -43.00)
>DroSim_CAF1 30459 108 + 1
ACAAAGGUUAAAGAUGGGAAUGGCCGGUUGGCCCGCCGGAGUCGCAGCUGCAUUUGCACACUGAACCCGAAAGCCGGGGGCGCGCGCGAUUCCACAUCGAACCCUU-UG
.((((((.....((((((...((((....))))..))((((((((.(((((....)))....(..((((.....))))..)))..)))))))).))))....))))-)) ( -48.00)
>DroEre_CAF1 20744 100 + 1
ACAAAGGUUAAAGAUGGGAA----UGGCCGGCCGGGCUGAGUCGCAGCUGCAUUUGCACACUGAACCCGAAAACCGGGGGC----GCGAUUCCACGUCGAACCCUU-UG
.((((((.....((((((((----(.((..(((.(((((.....)))))((....))........((((.....)))))))----)).))))).))))....))))-)) ( -39.40)
>DroYak_CAF1 31975 106 + 1
ACAAAGGUUAAAGAUGGGAAUGAAUGGCCAGCCCGCCGGAGUCGCAGCUGCAUUUGCACACUGAACCCGAAAACCGAGGGCG---GCGAUUCCACAUCGAACCCUUCUG
.....((((...((((.....((((.(((.((((..(((..((((((.(((....)))..)))....)))...))).)))))---)).))))..)))).))))...... ( -37.20)
>consensus
ACAAAGGUUAAAGAUGGGAAUGGCCGGUUGGCCCGCCGGAGUCGCAGCUGCAUUUGCACACUGAACCCGAAAACCGGGGGCG__CGCGAUUCCACAUCGAACCCUU_UG
.....((((...((((.....(((.((....)).))).(((((((.(.(((....))))...(..((((.....))))..)....)))))))..)))).))))...... (-31.44 = -32.16 +   0.72)

alignment

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secondary structure

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dotplot

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Window 0

Location 6,184,726 – 6,184,832
Length 106
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 90.16
Mean single sequence MFE -39.58
Consensus MFE -30.68
Energy contribution -31.80
Covariance contribution 1.12
Combinations/Pair 1.06
Mean z-score -1.56
Structure conservation index 0.78
SVM decision value 0.19
SVM RNA-class probability 0.626526
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6184726 106 - 22407834
CA-AAGGGUUCAAUGUGAAAUCGCG--CGCCCCCGGUUUUCGGGUUCAGUGUGCAAAUGCAGCUGCGACUCUGGCGGGCCAACCGGCCAUUCCCAUCUUUAACCUUUGU
((-((((.....(((.(((.(((((--((..((((.....))))..)....(((....))))).))))...((((.((....)).))))))).)))......)))))). ( -35.00)
>DroSec_CAF1 21027 108 - 1
CA-AAGGGUUCGAUGUGGAAUCGCGCGCGCCCCCGGUUUUCGGGUUCAGUGUGCAAAUGCAGCUGCGACUCAGGCGGGCCAACCGGCCAUUCCCAUCUUUAACCUUUGU
((-((((....((((.((((((((((((((.((((.....))))....))))))...(((....)))......)))((((....))))))))))))).....)))))). ( -44.20)
>DroSim_CAF1 30459 108 - 1
CA-AAGGGUUCGAUGUGGAAUCGCGCGCGCCCCCGGCUUUCGGGUUCAGUGUGCAAAUGCAGCUGCGACUCCGGCGGGCCAACCGGCCAUUCCCAUCUUUAACCUUUGU
((-((((....((((.((((((((((((((.((((.....))))....))))))...(((....)))......)))((((....))))))))))))).....)))))). ( -44.20)
>DroEre_CAF1 20744 100 - 1
CA-AAGGGUUCGACGUGGAAUCGC----GCCCCCGGUUUUCGGGUUCAGUGUGCAAAUGCAGCUGCGACUCAGCCCGGCCGGCCA----UUCCCAUCUUUAACCUUUGU
((-((((....((.(.(((((.(.----(((.((((.....(((((((((.(((....))))))).)))))...))))..)))))----))))).)).....)))))). ( -34.30)
>DroYak_CAF1 31975 106 - 1
CAGAAGGGUUCGAUGUGGAAUCGC---CGCCCUCGGUUUUCGGGUUCAGUGUGCAAAUGCAGCUGCGACUCCGGCGGGCUGGCCAUUCAUUCCCAUCUUUAACCUUUGU
...(((((((.((((.(((((.((---(((((((((...(((....((((.(((....))))))))))..)))).)))).))).....)))))))))...))))))).. ( -40.20)
>consensus
CA_AAGGGUUCGAUGUGGAAUCGCG__CGCCCCCGGUUUUCGGGUUCAGUGUGCAAAUGCAGCUGCGACUCAGGCGGGCCAACCGGCCAUUCCCAUCUUUAACCUUUGU
...(((((((.((((.((((((((....(..((((.....))))..)(((.(((....))))))))))....(((.((....)).))).))))))))...))))))).. (-30.68 = -31.80 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:14 2006