Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,181,970 – 6,182,060 |
Length | 90 |
Max. P | 0.532279 |
Location | 6,181,970 – 6,182,060 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 93.10 |
Mean single sequence MFE | -23.81 |
Consensus MFE | -19.56 |
Energy contribution | -20.20 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.04 |
Mean z-score | -1.32 |
Structure conservation index | 0.82 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.532279 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6181970 90 + 22407834 AUACAGAUACAGAUACGGGGGAAAACUGGAGGCAC---AGAUGCCAAGACGGCGCACAGGUGCCACAUUUUCUUCGAUUGCAGGGGUAUAAAU ((((.......(((.(((((((((..((..(((((---...((((.....)))).....))))).))))))))))))))......)))).... ( -24.72) >DroSec_CAF1 18274 85 + 1 ---CAGAUACAGAUACGGGGGAAAACUGGAGGCAC---AGAUGCCAAGACGGCGCACAGGUGCCACAUUUUCUUCGAUUGCAG--GUAUAAAU ---...((((.(((.(((((((((..((..(((((---...((((.....)))).....))))).))))))))))))))....--)))).... ( -25.10) >DroSim_CAF1 27753 88 + 1 AUACAGAUACAGAUACGGGGGAAAACUGGAGGCAC---AGAUGCCAAGACGGCGCACAGGUGCCACAUUUUCUUCGAUUGCAG--GUAUAAAU ......((((.(((.(((((((((..((..(((((---...((((.....)))).....))))).))))))))))))))....--)))).... ( -25.10) >DroEre_CAF1 18063 90 + 1 AUACACAUACAGAUACU-GGGAAAACUGGAGGCACGACGGAUGCCAAGACGGCGCACAGGUGCCACAUUUUCUUCGAUUGCAG--GUAUAAAU ......((((.(((.(.-.((((((.((..(((((...(..((((.....))))..)..))))).))))))))..))))....--)))).... ( -22.60) >DroYak_CAF1 29135 87 + 1 AUACACAUACAGAUACU-GGGAAAACUGGAGGCAC---AGAUGCCAAGGCGGCGCACAGGUGCCACAUUUUUUUCGAUUGCAG--GUAUAAAU ......((((......(-(..((((.((..(((((---...((((.....)))).....))))).)).))))..)).......--)))).... ( -21.52) >consensus AUACAGAUACAGAUACGGGGGAAAACUGGAGGCAC___AGAUGCCAAGACGGCGCACAGGUGCCACAUUUUCUUCGAUUGCAG__GUAUAAAU ......((((.(((.(((((((((......((((.......)))).....(((((....)))))...))))))))))))......)))).... (-19.56 = -20.20 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:10 2006