Locus 229

Sequence ID 2L_DroMel_CAF1
Location 637,513 – 637,621
Length 108
Max. P 0.604376
window364

overview

Window 4

Location 637,513 – 637,621
Length 108
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 86.02
Mean single sequence MFE -15.80
Consensus MFE -11.40
Energy contribution -12.04
Covariance contribution 0.64
Combinations/Pair 1.07
Mean z-score -1.70
Structure conservation index 0.72
SVM decision value 0.14
SVM RNA-class probability 0.604376
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 637513 108 - 22407834
AACGGCAAUGGCUGCACUAAUAAGCUCGUUCCCAGCUAUGUUCCCUCUCCUUUUUCAUUCCGAAACCCCAUUCCCAUUCCCAUUUCCGAUCCCAUUGCCAUUCGGAUU
...((((((((...(.......((((.......))))...............((((.....))))......................)...))))))))......... ( -17.30)
>DroSec_CAF1 26262 102 - 1
AACGGCAAUGGCUGCACUAAUAAGCUCGUUCCCAGCUAUGUUCCCUCUCCUUUCCCAUUCCGAUACCCCAUU------CCCAUUUCCGAUCCCAUUGCCAUUCGGAUU
...((((((((...(.......((((.......))))........................((........)------)........)...))))))))......... ( -16.00)
>DroSim_CAF1 26158 108 - 1
AACGGCAAUGGCUGCACUAAUAAGCUCGUUCCCAGCUAUGUUCCCUCUCCUUUCCCAUUCCGAUACCCCAUUCCCAUUCCCAUUUCCGAUCCCAUUGCCAUUCGGAUU
...((((((((...(.......((((.......))))........................((........))..............)...))))))))......... ( -16.00)
>DroEre_CAF1 30784 102 - 1
AACGGCAAUGGCUGCACUAAUAAGCUCGUUCCCAGCUAUGUUUCCUCUUUCUUUUCAUUCCGAAAACCCAUUCU------CAUUCCCGAUCUCUUGCCCAUUCCAAUU
...((.(((((..(((......((((.......))))..............(((((.....)))))........------..............)))))))))).... ( -13.00)
>DroYak_CAF1 29968 96 - 1
AACGGCAAUGGCUGCACUAAUAAGCUCGUUUCCAGCUAUGUUCCCUCUCCCUUUUCAUUCCGAAAACCCAUUCU------------CGAUCCCUUUGCCAUUCCGAUU
..(((.((((((..........((((.......))))..............(((((.....)))))........------------..........)))))))))... ( -16.70)
>consensus
AACGGCAAUGGCUGCACUAAUAAGCUCGUUCCCAGCUAUGUUCCCUCUCCUUUUUCAUUCCGAAACCCCAUUCC____CCCAUUUCCGAUCCCAUUGCCAUUCGGAUU
...((((((((...(.......((((.......))))........................(......)..................)...))))))))......... (-11.40 = -12.04 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:35 2006