Locus 2288

Sequence ID 2L_DroMel_CAF1
Location 6,180,193 – 6,180,288
Length 95
Max. P 0.999978
window3674

overview

Window 4

Location 6,180,193 – 6,180,288
Length 95
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 91.05
Mean single sequence MFE -22.84
Consensus MFE -21.14
Energy contribution -21.14
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -3.31
Structure conservation index 0.93
SVM decision value 5.19
SVM RNA-class probability 0.999978
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6180193 95 + 22407834
CUGUUGCACACAGAUUCUUAUCUCGCAGAUGCAGUUAUGUAUCUAGAUAUUCCGCA-----GUA---------CAACCUCAACCUCGAGUCUUUGGCAACUUCACACUC
..(((((.((.((((((.(((((...(((((((....))))))))))))....(.(-----(..---------....)))......)))))).)))))))......... ( -23.50)
>DroSec_CAF1 16504 95 + 1
CUGUUGCACACAGAUUCUUAUCUCGCAGAUGCAGUUAUGUAUCUAGAUAUUCCCCA-----GCA---------CAACCUCAACCUAGAGUCUUUGGCAACUUCACACUC
..(((((.((.((((((((((((...(((((((....)))))))))))).......-----...---------............))))))).)))))))......... ( -23.34)
>DroSim_CAF1 25966 95 + 1
CUGUUGCACACAGAUGCUUAUCUCGCAGAUGCAGUUAUGUAUCUAGAUAUUCCCCA-----GCA---------CAACCUCAACCUCGAGUCUUUGGCAACUUCACACUC
..(((((.((.((((((((((((...(((((((....))))))))))))......)-----)))---------....(((......)))))).)))))))......... ( -23.30)
>DroEre_CAF1 16314 95 + 1
CUGUUGCACACAGAUUCUUAUCUCGCAGAUGCAGUUAUGUAUCUAGAUAUUCCCCA-----CAA---------CAACCUCAACCUCGAGUCUUUGGCAACUUCACACUC
..(((((.((.((((((.(((((...(((((((....)))))))))))).......-----...---------.............)))))).)))))))......... ( -21.55)
>DroYak_CAF1 27350 109 + 1
CUGUUGCACACAGAUUCUUAUCUCGCAGAUGCAGUUAUGUAUCUAGAUAUUCCCCAUCUCACAACCUCAGCCUCAAACUCAAACUCGAGUCUUUGGCAACUUCACACUC
..(((((.((.((((((.........(((((((....)))))))((((.......))))...........................)))))).)))))))......... ( -22.50)
>consensus
CUGUUGCACACAGAUUCUUAUCUCGCAGAUGCAGUUAUGUAUCUAGAUAUUCCCCA_____GAA_________CAACCUCAACCUCGAGUCUUUGGCAACUUCACACUC
..(((((.((.(((....(((((...(((((((....))))))))))))............................(((......)))))).)))))))......... (-21.14 = -21.14 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:08 2006