Locus 2285

Sequence ID 2L_DroMel_CAF1
Location 6,178,139 – 6,178,255
Length 116
Max. P 0.672213
window3670

overview

Window 0

Location 6,178,139 – 6,178,255
Length 116
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 95.09
Mean single sequence MFE -32.77
Consensus MFE -29.20
Energy contribution -30.00
Covariance contribution 0.80
Combinations/Pair 1.12
Mean z-score -1.25
Structure conservation index 0.89
SVM decision value 0.29
SVM RNA-class probability 0.672213
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6178139 116 - 22407834
UGGAUCGCCGCUAAUCAACUGAUAUCGCUCCGGGCCAGAUCGCCUAUCGAAAAGCGAACAGCGUUUGGAAAGGCGUUAUCUGGAAACCGUAACCAAUUUGUAUCAUAUAUGGUGAC
....(((((((..(((....)))...))..(((.(((((((((((.((.(((.((.....)).))).)).)))))..))))))...))).....................))))). ( -36.00)
>DroSec_CAF1 14465 116 - 1
UGGAUCGCCGCUAAUCAACUGAUAUCGCUCUGGGCCAGAUCGCCUAUCGAAAAGUGAACAGCGUUUGGAAAGGUGUUAUCUGGAAACCGUAACCAAUUUGUAUCAUAUAUAGUGGC
......(((((((......((((((.....(((.(((((((((((.((.(((.((.....)).))).)).)))))..)))))).........)))....))))))....))))))) ( -32.60)
>DroSim_CAF1 23939 113 - 1
UGGAUCGCCGCUAAUCAACUGAUAUCGCUCCGGGCCAGAUCGCCUAUCGAAAAGCGAACAGCGUUUGGAAAGGUGUUAUCUGGAAACCGUAACCAAUUUGUAUCAUAUAU---GGC
......(((((..(((....)))...))..(((.(((((((((((.((.(((.((.....)).))).)).)))))..))))))...))).....................---))) ( -31.20)
>DroEre_CAF1 14224 116 - 1
UGGAUCGCCGCUAAUCAACUGAUAUCGCUCCGGGCCAGAUCGGCUAUCAAAAAGCGAACAGCGUUGGGAAAGGUGUUAUCUGGAAACCGUAACCAAUUUGUAUCAUAUAUAGUGGC
......(((((((......((((.(((((...((((.....)))).......)))))((((.(((((....(((...........)))....)))))))))))))....))))))) ( -31.60)
>DroYak_CAF1 25149 116 - 1
UGGAUCGCCGCUAAUCAACUGAUAUCGCUUCGGGCCAGAUCGCCUAUCAAAAAGCGAACAGCGUUUGGAAAGGUGUUAUCUGAAAACCGUAACCAAUUUGUAUCAUAUGUAGUGGC
......(((((((......((((((.....(((..((((((((((.((...(((((.....))))).)).)))))..)))))....)))..........))))))....))))))) ( -32.46)
>consensus
UGGAUCGCCGCUAAUCAACUGAUAUCGCUCCGGGCCAGAUCGCCUAUCGAAAAGCGAACAGCGUUUGGAAAGGUGUUAUCUGGAAACCGUAACCAAUUUGUAUCAUAUAUAGUGGC
......(((((((......((((((.....(((.(((((((((((.((.(((.((.....)).))).)).)))))..))))))...)))..........))))))....))))))) (-29.20 = -30.00 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:04 2006