Locus 2282

Sequence ID 2L_DroMel_CAF1
Location 6,174,390 – 6,174,510
Length 120
Max. P 0.513859
window3665

overview

Window 5

Location 6,174,390 – 6,174,510
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 84.13
Mean single sequence MFE -33.52
Consensus MFE -22.14
Energy contribution -22.70
Covariance contribution 0.56
Combinations/Pair 1.11
Mean z-score -2.25
Structure conservation index 0.66
SVM decision value -0.04
SVM RNA-class probability 0.513859
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6174390 120 + 22407834
UUCGAGUGGGCAUCCAUGGCACUUUUAUGACAGCUGUCGACCAUUUGGGCCGACGUUGUUGCGUAAAGUGUCAGCCAAGUCGUAACAUUACAGGCUUUACUGUAAUAAUAUUUAAAUUCU
..(((.(.(((.....(((((((((..(((((((.((((.((....))..)))))))))))...)))))))))))).).)))....(((((((......))))))).............. ( -38.40)
>DroPse_CAF1 30796 109 + 1
UA--------AUUCCAUCGACAUUUAACGACAGCUGUCGGCCAUUUGGAGCGACGAGGA---UAAGAGUGUCCGCCAAGUCGUUACAUUACAAGCUUUACUGUAAUAAAAUUUAAAUUUU
..--------..............(((((((.(((((((.((....))..))))).(((---((....)))))))...))))))).((((((........)))))).............. ( -24.40)
>DroSim_CAF1 20082 120 + 1
UUCGAGUGGGCAUCCAUGGCACUUUUAUGACAGCUGUCGACCAUUUGGGCCGACGUUGUUGCGUAAAGUGUCAGCCAAGUCGUAACAUUACAGGCUUUACUGUAAUAAUAUUUAAAUUCU
..(((.(.(((.....(((((((((..(((((((.((((.((....))..)))))))))))...)))))))))))).).)))....(((((((......))))))).............. ( -38.40)
>DroEre_CAF1 10161 120 + 1
UUCGAGUGGGCAUCCAUGGCACUUUUAUGACAGCUGUCGACCAUUUGGGCCGACGUUGUUGCGUAAAGUGUCAGCCAAGUCGUAACAUUACAGGCUUUACUGUAAUAAUAUUUAAAUUCU
..(((.(.(((.....(((((((((..(((((((.((((.((....))..)))))))))))...)))))))))))).).)))....(((((((......))))))).............. ( -38.40)
>DroYak_CAF1 20976 120 + 1
UUCGAGUGGGCAGCCAUGGCACUUUUAUGACAGCUGUCGACCAUUUGGGCCGACGUUGUUGCGUAAAGUGUCAGCCAAGUCGUAACAUUACAGGCUUUACUGUAAUAAUAUUUAAAUUCG
..(((.(.(((.....(((((((((..(((((((.((((.((....))..)))))))))))...)))))))))))).).)))....(((((((......))))))).............. ( -38.40)
>DroPer_CAF1 30717 109 + 1
UA--------AUUCCAUUGACAUUUAACGACAGCUGUCGACCAUUUGGAGCGACGAGGC---CAAAAGUGUCCGCCAAGUCGUUACAUUACAAGCUUUACUGUAAUAAAAUUCAAAUUUU
..--------......((((....(((((((...(((((.((....))..))))).(((---...........)))..))))))).((((((........)))))).....))))..... ( -23.10)
>consensus
UUCGAGUGGGCAUCCAUGGCACUUUUAUGACAGCUGUCGACCAUUUGGGCCGACGUUGUUGCGUAAAGUGUCAGCCAAGUCGUAACAUUACAGGCUUUACUGUAAUAAUAUUUAAAUUCU
........................(((((((....((((.((....))..))))((((.(((.....))).))))...))))))).(((((((......))))))).............. (-22.14 = -22.70 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:59 2006