Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,172,886 – 6,173,046 |
Length | 160 |
Max. P | 0.601537 |
Location | 6,172,886 – 6,173,006 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.75 |
Mean single sequence MFE | -23.46 |
Consensus MFE | -16.00 |
Energy contribution | -17.20 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.00 |
Mean z-score | -2.26 |
Structure conservation index | 0.68 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.577513 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6172886 120 + 22407834 UCAUUGCUUGUCCUGCAUUGCCUCAAAUUUGUAAACUAAAAGCGACCACUCACAGCACUUACCACUGAAAACAGUGAAACAACUUUUAUGGCAAUGAACACAAUGAAACCGCAAAACAUA ((((((..(((....(((((((..(((.((((.........((...........))......(((((....)))))..))))..)))..))))))).))))))))).............. ( -25.10) >DroSec_CAF1 9212 120 + 1 UCAUUGCUGGUUCUGCACUGCCUCAAAUUUGUAAACUCAAAGCGACCACUCACUGCACUUACCACUGGAAACAGUGGAACAACUUUUAUGGCAAUCAACACAAUGAAACCGCAAAACAUA ...((((.((((......((((..(((.((((.........(((.........))).....((((((....)))))).))))..)))..)))).(((......)))))))))))...... ( -29.40) >DroSim_CAF1 18599 108 + 1 ------------CUGCACUGCCUCAAAUUUGUAAACUCAAAGCGACCACUCACAGCACUUACCACUGGAAACAGUGGAACAACUUUUAUGGCAAUGAACACAAUGAAACCGCAAAACAUA ------------.(((..((((..(((.((((.........((...........)).....((((((....)))))).))))..)))..)))).((....))........)))....... ( -23.70) >DroEre_CAF1 8685 120 + 1 UCGUCGCUGAUCCUGCACUGCCUCAAAUUUGUAAACUCAAAGCGACCACUCACAGCACUUACCACUGGAAACACUGAAACAACUUUAAUGGCAAUGAACACAAUAAAACCGCAAAACAUA ((((.((.......))..((((..(((.((((.........((...........))......((.((....)).))..)))).)))...))))))))....................... ( -15.00) >DroYak_CAF1 18908 120 + 1 UCAUCGCUGGGGCUGCACUGCCUCAAAUUUGUAAACUAAAAGCGACCACUCGCAGCACUUACCACUGGAAGCUCUGGAACAACUUUUAUGGCAAUGAACACAAUGAAACCGCAAAACAUA ((((.((((((((......)))))....((((.........((((....))))........(((..(....)..))).)))).......))).))))....................... ( -24.10) >consensus UCAUCGCUGGUCCUGCACUGCCUCAAAUUUGUAAACUCAAAGCGACCACUCACAGCACUUACCACUGGAAACAGUGGAACAACUUUUAUGGCAAUGAACACAAUGAAACCGCAAAACAUA .............(((..((((..(((.((((.........((...........)).....((((((....)))))).)))).)))...)))).((....))........)))....... (-16.00 = -17.20 + 1.20)
Location | 6,172,926 – 6,173,046 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.33 |
Mean single sequence MFE | -32.28 |
Consensus MFE | -26.82 |
Energy contribution | -27.50 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.06 |
Mean z-score | -1.38 |
Structure conservation index | 0.83 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.601537 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6172926 120 - 22407834 CAACGAAAAUUGCCGCACAUCGCAUUUGCCAACUAAACAUUAUGUUUUGCGGUUUCAUUGUGUUCAUUGCCAUAAAAGUUGUUUCACUGUUUUCAGUGGUAAGUGCUGUGAGUGGUCGCU ...........(((((.(((.(((((((((((((((((.....))))...(((.....((....))..))).....)))))...(((((....))))))))))))).))).))))).... ( -31.60) >DroSec_CAF1 9252 120 - 1 CAUCGAAAAUUGCCGCACAUCGCAUUUGCCAACUAAACAUUAUGUUUUGCGGUUUCAUUGUGUUGAUUGCCAUAAAAGUUGUUCCACUGUUUCCAGUGGUAAGUGCAGUGAGUGGUCGCU ...........(((((.(((.(((((((((((((((((.....))))...(((.(((......)))..))).....)))))...(((((....))))))))))))).))).))))).... ( -34.50) >DroSim_CAF1 18627 120 - 1 CAUCGAAAAUUGCCGCACAUCGCAUUUGCCAACUAAACAUUAUGUUUUGCGGUUUCAUUGUGUUCAUUGCCAUAAAAGUUGUUCCACUGUUUCCAGUGGUAAGUGCUGUGAGUGGUCGCU ...........(((((.(((.(((((((((((((((((.....))))...(((.....((....))..))).....)))))...(((((....))))))))))))).))).))))).... ( -31.30) >DroEre_CAF1 8725 120 - 1 CAUCGAAAAUGGCCGCACAUUGCAUUUGCAAGCUAAACAUUAUGUUUUGCGGUUUUAUUGUGUUCAUUGCCAUUAAAGUUGUUUCAGUGUUUCCAGUGGUAAGUGCUGUGAGUGGUCGCU ..........((((((.(((.((((((((..(((((((((..((....((..(((((.((.((.....)))).)))))..))..))))))))..))).)))))))).))).))))))... ( -34.50) >DroYak_CAF1 18948 120 - 1 CAUCGAAAAUUGCCGCACAUCGCAUUUACCAACUAAACAUUAUGUUUUGCGGUUUCAUUGUGUUCAUUGCCAUAAAAGUUGUUCCAGAGCUUCCAGUGGUAAGUGCUGCGAGUGGUCGCU ...(((...((((.((((..((((...(((....((((.....))))...))).....))))....(((((((..(((((.......)))))...))))))))))).))))....))).. ( -29.50) >consensus CAUCGAAAAUUGCCGCACAUCGCAUUUGCCAACUAAACAUUAUGUUUUGCGGUUUCAUUGUGUUCAUUGCCAUAAAAGUUGUUCCACUGUUUCCAGUGGUAAGUGCUGUGAGUGGUCGCU ...........(((((.(((.(((((((((((((((((.....))))...(((...............))).....)))))...(((((....))))))))))))).))).))))).... (-26.82 = -27.50 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:55 2006