Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 636,865 – 636,965 |
Length | 100 |
Max. P | 0.500000 |
Location | 636,865 – 636,965 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 96.88 |
Mean single sequence MFE | -29.34 |
Consensus MFE | -27.84 |
Energy contribution | -27.44 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.07 |
Mean z-score | -1.08 |
Structure conservation index | 0.95 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 636865 100 + 22407834 GAUG-GAUAGAUGGAUGGUCUUAUAGUGGCUG---GUUGUUCGGUUUGGAGGAUGAUUCUAUUGCCAUUAUGGCCGCGAAUGCGCUUGUUCGAUUAUGCGGCGU ((((-(...(((((((.(((((.....(((((---(....))))))...))))).).)))))).)))))...(((((((((.((......))))).)))))).. ( -30.70) >DroSec_CAF1 25602 104 + 1 GAUGGGAUAGAUGGAUGGUCUUAUAGUGGCUGGUGGUUGUUCGGUUUGGAGGAUGAUUCUAUUGCCAUUAUGGCCGCGAAUGCGCUUGUUCGAUUAUGCGGCGU (((((((((((...((.(((((.....((((((.......))))))...))))).)))))))).)))))...(((((((((.((......))))).)))))).. ( -29.20) >DroSim_CAF1 25500 103 + 1 GAUG-GAUAGAUGGAUGGUCUUAUAGUGGCUGGUGGUUGUUCGGUUUGGAGGAUGAUUCUAUUGCCAUUAUGGCCGCGAAUGCGCUUGUUCGAUUAUGCGGCGU ((((-(...(((((((.(((((.....((((((.......))))))...))))).).)))))).)))))...(((((((((.((......))))).)))))).. ( -30.40) >DroEre_CAF1 30105 100 + 1 GAUG-GAUAGACGGAUGGUCUUAUAGUGGCUG---GUUGUUCGGUUUGGAGGAUGAUUCUAUUGCCAUUAUGGCCGCGAAUGCGCUUGUUCGAUUAUGCGGCGU ..((-.((((.(((((((((..((((((((.(---((..(((........)))..))).....))))))))))))(((....)))..))))).)))).)).... ( -29.00) >DroYak_CAF1 29287 100 + 1 GAUG-GAUAGACGGAUGGUCUUAUAGUGGUUG---GUUGUUCGGUUUGGAGGAUGAUUCUAUUGCCAUUAUGGCCGCGAAUGCGCUUGUUCGAUUAUGCGGCGU ..((-.((((.(((((((((..((((((((.(---((..(((........)))..))).....))))))))))))(((....)))..))))).)))).)).... ( -27.40) >consensus GAUG_GAUAGAUGGAUGGUCUUAUAGUGGCUG___GUUGUUCGGUUUGGAGGAUGAUUCUAUUGCCAUUAUGGCCGCGAAUGCGCUUGUUCGAUUAUGCGGCGU ........((((.....))))(((((((((.....((..(((........)))..))......)))))))))(((((((((.((......))))).)))))).. (-27.84 = -27.44 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:34 2006