Locus 228

Sequence ID 2L_DroMel_CAF1
Location 636,865 – 636,965
Length 100
Max. P 0.500000
window363

overview

Window 3

Location 636,865 – 636,965
Length 100
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 96.88
Mean single sequence MFE -29.34
Consensus MFE -27.84
Energy contribution -27.44
Covariance contribution -0.40
Combinations/Pair 1.07
Mean z-score -1.08
Structure conservation index 0.95
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 636865 100 + 22407834
GAUG-GAUAGAUGGAUGGUCUUAUAGUGGCUG---GUUGUUCGGUUUGGAGGAUGAUUCUAUUGCCAUUAUGGCCGCGAAUGCGCUUGUUCGAUUAUGCGGCGU
((((-(...(((((((.(((((.....(((((---(....))))))...))))).).)))))).)))))...(((((((((.((......))))).)))))).. ( -30.70)
>DroSec_CAF1 25602 104 + 1
GAUGGGAUAGAUGGAUGGUCUUAUAGUGGCUGGUGGUUGUUCGGUUUGGAGGAUGAUUCUAUUGCCAUUAUGGCCGCGAAUGCGCUUGUUCGAUUAUGCGGCGU
(((((((((((...((.(((((.....((((((.......))))))...))))).)))))))).)))))...(((((((((.((......))))).)))))).. ( -29.20)
>DroSim_CAF1 25500 103 + 1
GAUG-GAUAGAUGGAUGGUCUUAUAGUGGCUGGUGGUUGUUCGGUUUGGAGGAUGAUUCUAUUGCCAUUAUGGCCGCGAAUGCGCUUGUUCGAUUAUGCGGCGU
((((-(...(((((((.(((((.....((((((.......))))))...))))).).)))))).)))))...(((((((((.((......))))).)))))).. ( -30.40)
>DroEre_CAF1 30105 100 + 1
GAUG-GAUAGACGGAUGGUCUUAUAGUGGCUG---GUUGUUCGGUUUGGAGGAUGAUUCUAUUGCCAUUAUGGCCGCGAAUGCGCUUGUUCGAUUAUGCGGCGU
..((-.((((.(((((((((..((((((((.(---((..(((........)))..))).....))))))))))))(((....)))..))))).)))).)).... ( -29.00)
>DroYak_CAF1 29287 100 + 1
GAUG-GAUAGACGGAUGGUCUUAUAGUGGUUG---GUUGUUCGGUUUGGAGGAUGAUUCUAUUGCCAUUAUGGCCGCGAAUGCGCUUGUUCGAUUAUGCGGCGU
..((-.((((.(((((((((..((((((((.(---((..(((........)))..))).....))))))))))))(((....)))..))))).)))).)).... ( -27.40)
>consensus
GAUG_GAUAGAUGGAUGGUCUUAUAGUGGCUG___GUUGUUCGGUUUGGAGGAUGAUUCUAUUGCCAUUAUGGCCGCGAAUGCGCUUGUUCGAUUAUGCGGCGU
........((((.....))))(((((((((.....((..(((........)))..))......)))))))))(((((((((.((......))))).)))))).. (-27.84 = -27.44 +  -0.40) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:34 2006