Locus 2279

Sequence ID 2L_DroMel_CAF1
Location 6,172,489 – 6,172,604
Length 115
Max. P 0.928479
window3659

overview

Window 9

Location 6,172,489 – 6,172,604
Length 115
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 97.39
Mean single sequence MFE -27.84
Consensus MFE -25.34
Energy contribution -25.46
Covariance contribution 0.12
Combinations/Pair 1.06
Mean z-score -1.58
Structure conservation index 0.91
SVM decision value 1.19
SVM RNA-class probability 0.928479
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6172489 115 + 22407834
UGGUAUUUUGAAGUUUGGCUGACAUGCCUGAUCCUUUGCGGUUAGUUGAACUUUUAUUGUCCUUCGCCUGCUUUUUGUCAGUUCUGUUCAUGUAGAAACCAUGAGAUUGCAUUUU
.((......((((((..((((((.(((..........)))))))))..))))))......))......(((.(((..(...(((((......)))))...)..)))..))).... ( -26.50)
>DroSec_CAF1 8817 115 + 1
UGGCAUUUUGAAGUUUGGCUGACAUGCCUGAUCCUUUGCGGUUAGUUGAACUUUUAUUGUCCUUCGCCUGCUUUUUGUCAGUUCUGUUCAUGUAGAAAGCAUGAGAUUGCAUUUU
.((((....((((((..((((((.(((..........)))))))))..))))))...))))..((.(.(((((((((.((..........))))))))))).).))......... ( -30.40)
>DroSim_CAF1 18204 115 + 1
UGGCAUUUUGAAGUUUGGCUGACAUGCCUGAUCCUUUGCGGUUAGUUGAACUUUUAUUGUCCUUCGCCUGCUUUUUGUCAGUUCUGUUCAUGUAGAAACCAUGAGAUUGCAUUUU
.((((....((((((..((((((.(((..........)))))))))..))))))...)))).......(((.(((..(...(((((......)))))...)..)))..))).... ( -28.20)
>DroEre_CAF1 7996 115 + 1
UGGCAUUUUGAAGUUUGGCUGACAUGCCUGAUCCUUUGCGGUUAGUUGAACUUUUAUUGUCCUGCCCCUGCUUUUUGUCAGUUUCGUUCAUGUAGAAACCAUGAGAUUGCAUUUU
.((((....((((((..((((((.(((..........)))))))))..))))))...)))).......(((.(((..(..(((((.........))))).)..)))..))).... ( -28.30)
>DroYak_CAF1 18500 115 + 1
UGGCAUUUUGAAGUUUGGCUGACAUGCCUGAUCCUUUGCGGUUAGUUGAACUUUUAUUAUCCUUCCCCUGCUUUUUGUCAGUUCUGUUCAUGUAGAAACCAUGAGAUUGCAUUUU
.((......((((((..((((((.(((..........)))))))))..))))))......))......(((.(((..(...(((((......)))))...)..)))..))).... ( -25.80)
>consensus
UGGCAUUUUGAAGUUUGGCUGACAUGCCUGAUCCUUUGCGGUUAGUUGAACUUUUAUUGUCCUUCGCCUGCUUUUUGUCAGUUCUGUUCAUGUAGAAACCAUGAGAUUGCAUUUU
.((((....((((((..((((((.(((..........)))))))))..))))))...)))).......(((.(((..(...(((((......)))))...)..)))..))).... (-25.34 = -25.46 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:53 2006