Locus 2278

Sequence ID 2L_DroMel_CAF1
Location 6,171,896 – 6,172,016
Length 120
Max. P 0.727441
window3658

overview

Window 8

Location 6,171,896 – 6,172,016
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 84.89
Mean single sequence MFE -22.90
Consensus MFE -18.20
Energy contribution -17.87
Covariance contribution -0.33
Combinations/Pair 1.24
Mean z-score -2.11
Structure conservation index 0.79
SVM decision value 0.42
SVM RNA-class probability 0.727441
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6171896 120 - 22407834
UAUACCCACAGAAGUACCCAUACAAAUGCAGACGUUGGCGCAUAAAUAUUUAAGUCCAAUGCGUUUUCAUUCCACAGUCGUUGGCAAAUAAAACAAACUGCCAAUGAAUAUUCCUCCAAC
..........(((...........((((.(((((((((.((.(((....))).)))))..)))))).))))......(((((((((............)))))))))...)))....... ( -21.10)
>DroPse_CAF1 25461 107 - 1
CUAGCG------------CGCACAAACGCAGACAUUGG-GCAUAAAUAUUUAAGCCGAAUGCGUUUUCAUUCCACAGACAUUGGCAAAUAAAACAAACUGCCAAUGAAUUUCCCUCCCAG
..((((------------(((......))....(((.(-((.(((....))).))).)))))))).............((((((((............)))))))).............. ( -23.70)
>DroSec_CAF1 8185 120 - 1
UAUACUCACAGAAGUACCGACACAAAUGUAGACGUUGGCGCAUAAAUAUUUAAGUCCAAUGCGUUUUCAUUCCACAGUCGUUGGCAAAUAAAACAAACUGCCAAUGAAUAUUCCUCCAAC
..((((......))))........((((.(((((((((.((.(((....))).)))))..)))))).))))......(((((((((............)))))))))............. ( -21.50)
>DroEre_CAF1 7427 108 - 1
UAUACU------------CACACAGAUGCAGACGUUGGCGCAUAAAUAUUUAAGCCCAAUGCGUUUUCAUUCCACAGUCGUUGGCAAAUAAAACAAACUGCCAAUGAAUAUUCCUCCAAC
......------------......((((.(((((((((.((.(((....))).)))))..)))))).))))......(((((((((............)))))))))............. ( -23.90)
>DroYak_CAF1 17920 108 - 1
UAUACC------------CACACCAAUGCAGACGUUGGCGCAUAAAUAUUUAAGCCCAAUGCGUUUUCAUUCCACAGUCGUUGGCAAAUAAAACAAACUGCCAAUGAAUAUUCCUCCAAC
......------------......((((.(((((((((.((.(((....))).)))))..)))))).))))......(((((((((............)))))))))............. ( -23.50)
>DroPer_CAF1 25385 107 - 1
CUAGCG------------CGCACAAACGCAGACAUUGG-GCAUAAAUAUUUAAGCCGAAUGCGUUUUCAUUCCACAGACAUUGGCAAAUAAAACAAACUGCCAAUGAAUUUCCCUCCCAG
..((((------------(((......))....(((.(-((.(((....))).))).)))))))).............((((((((............)))))))).............. ( -23.70)
>consensus
UAUACC____________CACACAAAUGCAGACGUUGGCGCAUAAAUAUUUAAGCCCAAUGCGUUUUCAUUCCACAGUCGUUGGCAAAUAAAACAAACUGCCAAUGAAUAUUCCUCCAAC
.......................((((((....(((((.((.(((....))).)))))))))))))...........(((((((((............)))))))))............. (-18.20 = -17.87 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:51 2006