Locus 2272

Sequence ID 2L_DroMel_CAF1
Location 6,166,967 – 6,167,067
Length 100
Max. P 0.996804
window3649

overview

Window 9

Location 6,166,967 – 6,167,067
Length 100
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 96.86
Mean single sequence MFE -22.34
Consensus MFE -21.58
Energy contribution -21.78
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.85
Structure conservation index 0.97
SVM decision value 2.75
SVM RNA-class probability 0.996804
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6166967 100 - 22407834
-----CUCGGCAUCUUGCCAUCUUGGCAUCUUGUUGUGUUUUCCAUGUAAAUACUUGUAAUUUGUCAUUUAACGCAACCUGUCACGCCCCGUCUCCUCCAGAGAA
-----...(((....((((.....))))....((((((((....((((((((.......))))).)))..)))))))).......)))...((((.....)))). ( -23.00)
>DroSec_CAF1 3314 100 - 1
-----CUCGGCAUCUUGCCAUCUUGGCAUCUUGUUGUGUUUUCCAUGUAAAUACUUGUAAUUUGUCAUUUAACGCAACCUGUCACGCCACGUCUCCUCCAGAGAA
-----...(((....((((.....))))....((((((((....((((((((.......))))).)))..)))))))).......)))...((((.....)))). ( -23.90)
>DroSim_CAF1 12718 100 - 1
-----CUCGGCAUCUUGCCAUCUUGGCAUCUUGUUGUGUUUUCCAUGUAAAUACUUGUAAUUUGUCAUUUAACGCAACCUGUCACGCCCCGUCUCCUCCAGAGAA
-----...(((....((((.....))))....((((((((....((((((((.......))))).)))..)))))))).......)))...((((.....)))). ( -23.00)
>DroEre_CAF1 2736 100 - 1
-----CUUGCCAUCUUGCCAUCUUGGCAUCUUGUUGUGUUUUCCAUGUAAAUACUUGUAAUUUGUCAUUUAACGCAACCUGUCACGCCCCGUCUCCUCCAGAGAA
-----...((.....((((.....))))....((((((((....((((((((.......))))).)))..)))))))).......))....((((.....)))). ( -18.50)
>DroYak_CAF1 12892 105 - 1
AGCAUCUCGGCAUCUUGCCAUCUUGGCAUCUUGUUGUGUUUUCCAUGUAAAUACUUGUAAUUUGUCAUUUAACGCAACCUGUCACGCCCCGUCUCCUCCAGAGAA
....(((((((.....))).....(((..(..((((((((....((((((((.......))))).)))..))))))))..)....)))............)))). ( -23.30)
>consensus
_____CUCGGCAUCUUGCCAUCUUGGCAUCUUGUUGUGUUUUCCAUGUAAAUACUUGUAAUUUGUCAUUUAACGCAACCUGUCACGCCCCGUCUCCUCCAGAGAA
........(((....((((.....))))....((((((((....((((((((.......))))).)))..)))))))).......)))...((((.....)))). (-21.58 = -21.78 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:43 2006