Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,158,627 – 6,158,744 |
Length | 117 |
Max. P | 0.658011 |
Location | 6,158,627 – 6,158,744 |
---|---|
Length | 117 |
Sequences | 3 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 79.27 |
Mean single sequence MFE | -14.93 |
Consensus MFE | -8.42 |
Energy contribution | -8.87 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.06 |
Mean z-score | -2.22 |
Structure conservation index | 0.56 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.658011 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6158627 117 + 22407834 CAUUGAGAAGCUGUAAAAAGCUGAGGGAAAAUUCUUAAUUUACAAAAAAGAAACGAAACGAAACGCAACGCAAAAAAGGAAAAACUUCUCUGCGCAAUAAAUGAAACGUAAGGUAAA .(((((((((((......))))..........)))))))((((.........................((((.(.(((......))).).))))............(....))))). ( -14.20) >DroPse_CAF1 6047 93 + 1 CAUUGAGAAGCUGUAAAAAGCUGCAGGGAAAUUCUUAAUUUACAAAAA-AAA--------------------AGAAAGGAAAACC---UCUGCGUAAUAAAUGAAACGUAAAAGAAA ((((....((((......))))((((((...(((((..(((.......-.))--------------------)..)))))....)---)))))......)))).............. ( -15.70) >DroPer_CAF1 6121 94 + 1 CAUUGAGAAGCUGUAAAAAGCUGCAGGGAAAUUCUUAAUUUACAAAAAAAAA--------------------AGAAAGGAAAACC---UCUGCGUAAUAAAUGAAACGUAAAAGAAA ((((....((((......))))((((((...(((((..(((.........))--------------------)..)))))....)---)))))......)))).............. ( -14.90) >consensus CAUUGAGAAGCUGUAAAAAGCUGCAGGGAAAUUCUUAAUUUACAAAAAAAAA____________________AGAAAGGAAAACC___UCUGCGUAAUAAAUGAAACGUAAAAGAAA .((((((((.(((((......))))).....))))))))...................................................(((((..........)))))....... ( -8.42 = -8.87 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:30 2006