Locus 2265

Sequence ID 2L_DroMel_CAF1
Location 6,157,736 – 6,157,856
Length 120
Max. P 0.585636
window3634

overview

Window 4

Location 6,157,736 – 6,157,856
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 93.89
Mean single sequence MFE -35.52
Consensus MFE -32.31
Energy contribution -32.09
Covariance contribution -0.22
Combinations/Pair 1.08
Mean z-score -1.71
Structure conservation index 0.91
SVM decision value 0.10
SVM RNA-class probability 0.585636
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6157736 120 + 22407834
GAUGUGUUUGCUCCUCCCUGAUAAAUUUAUGAGGCGGUCUGGUCAUAAAGGACACGCCGUCCUGCCGACAGGAUCCGCUGAGCAUUUGCUUGGCUGAUUGAAUUUUUCUUUGCAUAUUUU
(((((((............((.(((((((...((((((((.........)))).))))((((((....))))))..((..(((....)))..))....))))))).))...))))))).. ( -34.46)
>DroSim_CAF1 3581 120 + 1
GAUGUGUUUGCUCCUCCCUGAUAAAUUUAUGAGGCGGCCUGGUCAUAAAGGACAUGCCGUCCUGCCGACAGGAUCCGCUGAGCAUUUGCUCGGCUGAUUGAAUUUUUCUUUGCAUAUUUU
(((((((..(((((((..(((.....))).)))).)))(((.((....(((((.....)))))...)))))((((.(((((((....))))))).))))............))))))).. ( -36.60)
>DroYak_CAF1 3507 117 + 1
GAUGUGUUUGCU---CCCUGAUAAAUUUAUAAGGCCGCCUGGUCAUAAAGGACUUGCCGUCCUGCCGCCAGGAUUCGCUGAGCAUUUGCUUGGCUGAUUGAAUUUUUCUUUGCAUAUUUU
(((((((.....---....((.(((((((...((((.((((((.....(((((.....)))))...)))))).......((((....))))))))...))))))).))...))))))).. ( -35.50)
>consensus
GAUGUGUUUGCUCCUCCCUGAUAAAUUUAUGAGGCGGCCUGGUCAUAAAGGACAUGCCGUCCUGCCGACAGGAUCCGCUGAGCAUUUGCUUGGCUGAUUGAAUUUUUCUUUGCAUAUUUU
(((((((............((.(((((((...((((.(((........)))...))))((((((....))))))..(((((((....)))))))....))))))).))...))))))).. (-32.31 = -32.09 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:29 2006