| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,156,314 – 6,156,410 |
| Length | 96 |
| Max. P | 0.736666 |
| Location | 6,156,314 – 6,156,410 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 96.18 |
| Mean single sequence MFE | -13.71 |
| Consensus MFE | -12.84 |
| Energy contribution | -12.40 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.94 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.601743 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6156314 96 + 22407834 UUUAAUUACCCCAAGAAGUCAGCUAACCAAAGUCAACAGCUAAAUUGGGCGCUGGAAAAUAAAAACAAAAGUAAAUACUUCACAAGCAAGAAAAAA ..............(((((((((...(((((((.....)))...))))..))))..........((....))....)))))............... ( -12.40) >DroSim_CAF1 2163 96 + 1 UUUAAUUACCCCAAGAAGUCAGCUAACCAAAGUCAACAGCUAAAUUGGGCGCUGGAAAAUAAAAACAAAAGUAAAUACUUCACCAGCAAGAAAAAA .........(((((....(.((((.............)))).).))))).(((((.........((....))..........)))))......... ( -13.83) >DroYak_CAF1 2151 95 + 1 UUUAAUUGCCCCAAGAAGUCACCUAACCAAAGUCAACAGCUAAAUUGGGCGGUGGAAAAUAAAAACAAAAGUAAAUACUUCACGAGCAAGAAAAA- .....((((.(...(((((((((...(((((((.....)))...))))..))))..........((....))....)))))..).))))......- ( -14.90) >consensus UUUAAUUACCCCAAGAAGUCAGCUAACCAAAGUCAACAGCUAAAUUGGGCGCUGGAAAAUAAAAACAAAAGUAAAUACUUCACAAGCAAGAAAAAA ..............(((((((((...(((((((.....)))...))))..))))..........((....))....)))))............... (-12.84 = -12.40 + -0.44)
| Location | 6,156,314 – 6,156,410 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 96.18 |
| Mean single sequence MFE | -21.71 |
| Consensus MFE | -17.95 |
| Energy contribution | -18.40 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.61 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.736666 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6156314 96 - 22407834 UUUUUUCUUGCUUGUGAAGUAUUUACUUUUGUUUUUAUUUUCCAGCGCCCAAUUUAGCUGUUGACUUUGGUUAGCUGACUUCUUGGGGUAAUUAAA .........(((.(..(((((...((....))...)))))..))))((((.....(((.((((((....)))))).).)).....))))....... ( -20.50) >DroSim_CAF1 2163 96 - 1 UUUUUUCUUGCUGGUGAAGUAUUUACUUUUGUUUUUAUUUUCCAGCGCCCAAUUUAGCUGUUGACUUUGGUUAGCUGACUUCUUGGGGUAAUUAAA .........(((((.((((((...((....))...)))))))))))((((.....(((.((((((....)))))).).)).....))))....... ( -25.70) >DroYak_CAF1 2151 95 - 1 -UUUUUCUUGCUCGUGAAGUAUUUACUUUUGUUUUUAUUUUCCACCGCCCAAUUUAGCUGUUGACUUUGGUUAGGUGACUUCUUGGGGCAAUUAAA -......((((((..(((((....((....))..........((((..((((..............))))...)))))))))...))))))..... ( -18.94) >consensus UUUUUUCUUGCUCGUGAAGUAUUUACUUUUGUUUUUAUUUUCCAGCGCCCAAUUUAGCUGUUGACUUUGGUUAGCUGACUUCUUGGGGUAAUUAAA .........(((.(..(((((...((....))...)))))..))))((((.....(((.((((((....)))))).).)).....))))....... (-17.95 = -18.40 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:28 2006