Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,154,116 – 6,154,236 |
Length | 120 |
Max. P | 0.606780 |
Location | 6,154,116 – 6,154,236 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.22 |
Mean single sequence MFE | -24.42 |
Consensus MFE | -15.38 |
Energy contribution | -15.83 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.14 |
Mean z-score | -1.49 |
Structure conservation index | 0.63 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.606780 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6154116 120 + 22407834 GUUGAUAUAUUACUGAACGAAAUUUCUUUUCCAGUUGGCUAGAAUCAAUGGGGACUGAAUGUCGAAAGUCAAAGCUCGCACAGUAGGCGGUCAAAAAUCAGUGCCAAUAAACAAGGAACA .(((((...((((((..(((...(((..((((.(((((......))))).))))..)))((.(....).))....)))..))))))...)))))......((.((.........)).)). ( -26.50) >DroSim_CAF1 2 97 + 1 --------------------UAUUUCUUUUCCUGUUGGCUAAUAUCAAUG---ACUACUCGUCGAAAGUCAAAGCUCGCACAGUAGGCGGUCAAAAAUCAUUGCCAAUAAACAAGGAACA --------------------...((((((...(((((((.........((---(((....(.(....).)...(((..(...)..)))))))).........)))))))...)))))).. ( -22.87) >DroYak_CAF1 3 98 + 1 ---------------------AUUUCUUUUUCAGUUGGCUAGAAUCAAUGG-GACCCAAUGUUGAAAGGAAAAGCUUGCACAGUGGGCGGUUGAAAAUCAGUGCCAAUAAACAAGGAACA ---------------------..((((((....((((((..((.(((((.(-..((((.(((...(((......)))..))).))))).)))))...))...))))))....)))))).. ( -23.90) >consensus _____________________AUUUCUUUUCCAGUUGGCUAGAAUCAAUGG_GACUAAAUGUCGAAAGUCAAAGCUCGCACAGUAGGCGGUCAAAAAUCAGUGCCAAUAAACAAGGAACA .......................((((((....((((((.............((((......(....).....(((..(...)..)))))))..........))))))....)))))).. (-15.38 = -15.83 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:22 2006