Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,138,867 – 6,138,981 |
Length | 114 |
Max. P | 0.634085 |
Location | 6,138,867 – 6,138,981 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 82.07 |
Mean single sequence MFE | -24.81 |
Consensus MFE | -12.83 |
Energy contribution | -13.39 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.14 |
Mean z-score | -2.20 |
Structure conservation index | 0.52 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.634085 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6138867 114 - 22407834 UUGCGUGCGCUGGUUAUACAACUGCCCACUCCAGCAGGCUUACACAUAUGUACAUAUGUAUGUACCACAUAUGUGCAAUCAGAAAAUAAUGAAUAAUUUAAAAUGUCUGCACUC ....(((((((((.................)))))((((.........(((((((((((.......))))))))))).(((........)))............)))))))).. ( -30.13) >DroSec_CAF1 7708 110 - 1 UUGCGUGCGCUGGUUAUACAACUGCCCACUCCAGCAGGCUUACACAUAUGU----AUGUAUGUACCACAUAUGUGCAUUCAGAAAAUAAUGAAUAAUUUAAAAUGUCUGCACUC ....(((((((((.................)))))((((...(((((((((----..((....)).))))))))).(((((........)))))..........)))))))).. ( -28.53) >DroSim_CAF1 7886 110 - 1 UUGCGUGCGCUGGUUAUACAACUGCCCACUCCAGCUGGCUUACACAUAUGU----AUGUAUGUACUACAUAUGUGCAUUCAGAAAAUAAUGAAUAAUUUAAAAUGUCUGCACUC ....(((((((((.................))))).(((...(((((((((----(.((....)))))))))))).(((((........)))))..........))).)))).. ( -29.23) >DroEre_CAF1 9735 93 - 1 UUGCGCGUGCUGGUUAUACAACUGCCCCCUCCCCCU-----CCA-------------GCAUGU---ACAUAUGUGCAUUCAGAAAAUAAUGAAUAAUUUAAAAUGUCCGCACUC .((..((((((((.......................-----)))-------------))))).---.))...(((((((((........)))))..............)))).. ( -19.33) >DroYak_CAF1 8251 88 - 1 UUGCGCGUGCUGGUUAUACAACGGCCCACUCCAC-----------------------GUAUGU---ACAUAUGUGCAUUCGGAAAAUAAUGAAUUAUUUAAAAUGUCUGCACUC .((..((((((((.................))).-----------------------))))).---.))...(((((..((..((((((....))))))....))..))))).. ( -16.83) >consensus UUGCGUGCGCUGGUUAUACAACUGCCCACUCCAGCAGGCUUACACAUAUGU____AUGUAUGUAC_ACAUAUGUGCAUUCAGAAAAUAAUGAAUAAUUUAAAAUGUCUGCACUC .((((((((((((.................)))))......................(((((.....)))))))))(((((........)))))..............)))... (-12.83 = -13.39 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:19 2006