Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,136,995 – 6,137,113 |
Length | 118 |
Max. P | 0.985257 |
Location | 6,136,995 – 6,137,113 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.36 |
Mean single sequence MFE | -34.70 |
Consensus MFE | -27.80 |
Energy contribution | -28.04 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.03 |
Mean z-score | -3.18 |
Structure conservation index | 0.80 |
SVM decision value | 2.00 |
SVM RNA-class probability | 0.985257 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6136995 118 + 22407834 -UCCGGCAAGUCAUCAAGCAAAUCGCGAGCAUCUGCCGUUUAUUUUUACAUUUCACGCUCGCUGCUG-GCUGCAUUACUUUGUAAUUAAUGCGGCAAAUGGUUUGUUUGCAUAUUGAUUA -.......(((((.((((((((((((((((.......((........)).......)))))).....-(((((((((.........)))))))))....)))))))))).....))))). ( -33.94) >DroSec_CAF1 5502 115 + 1 CUCCGGCAAGUCAUCAAGCAAAUCGCGAGCAUCUGCCGUUUAUUUUUACAUUUCACGCUCGCUGC-----UGCAUUACUUUGUAAUUAAUGCGGCAAAUGGUUUGUUUGCAUAUUGAUUA ........(((((.((((((((((((((((.......((........)).......))))))(((-----(((((((.........))))))))))...)))))))))).....))))). ( -34.74) >DroSim_CAF1 5647 115 + 1 CUCCGGCAAGUCAUCAAGCAAAUCGCGAGCAUCUGCCGUUUAUUUUUACAUUUCACGCUCGCUGC-----UGCAUUACUUUGUAAUUAAUGCGGCAAAUGGUUUGUUUGCAUAUUGAUUA ........(((((.((((((((((((((((.......((........)).......))))))(((-----(((((((.........))))))))))...)))))))))).....))))). ( -34.74) >DroEre_CAF1 5886 114 + 1 -UCCGGCAAGUCAUCAAGCAAAUCGCGAGCAUCUGCCGUUUAUUUUUACAUUUCACGCUCGCUG-----CUGCAUUACUUUGUAAUUAAUGCGGCAAAUGGUUUGUUUGCAUAUUGAUUA -.......(((((.((((((((((((((((.......((........)).......))))))((-----((((((((.........))))))))))...)))))))))).....))))). ( -34.74) >DroYak_CAF1 5892 119 + 1 -UCCGGCAAGUCAUCAGGCAAAUCGCGAGCAUCUGCCGUUUAUUUUUACAUUUCACGCUCGCUGCCGCGCUGCAUUACUUUGUAAUUAAUGCGGCAAAUGGUUUGUUUGCAUAUUGAUUA -.......(((((.((((((((((((((((.......((........)).......))))))(((((((.((.(((((...))))))).)))))))...)))))))))).....))))). ( -35.34) >consensus _UCCGGCAAGUCAUCAAGCAAAUCGCGAGCAUCUGCCGUUUAUUUUUACAUUUCACGCUCGCUGC____CUGCAUUACUUUGUAAUUAAUGCGGCAAAUGGUUUGUUUGCAUAUUGAUUA ........(((((.((((((((((((((((.......((........)).......)))))).......((((((((.........)))))))).....)))))))))).....))))). (-27.80 = -28.04 + 0.24)
Location | 6,136,995 – 6,137,113 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.36 |
Mean single sequence MFE | -29.40 |
Consensus MFE | -25.10 |
Energy contribution | -25.10 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.82 |
Structure conservation index | 0.85 |
SVM decision value | 1.27 |
SVM RNA-class probability | 0.938837 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6136995 118 - 22407834 UAAUCAAUAUGCAAACAAACCAUUUGCCGCAUUAAUUACAAAGUAAUGCAGC-CAGCAGCGAGCGUGAAAUGUAAAAAUAAACGGCAGAUGCUCGCGAUUUGCUUGAUGACUUGCCGGA- ..(((((...((((((.........((.((((((.........)))))).))-.....((((((((....(((........)))....))))))))).))))))))))...........- ( -27.20) >DroSec_CAF1 5502 115 - 1 UAAUCAAUAUGCAAACAAACCAUUUGCCGCAUUAAUUACAAAGUAAUGCA-----GCAGCGAGCGUGAAAUGUAAAAAUAAACGGCAGAUGCUCGCGAUUUGCUUGAUGACUUGCCGGAG ..(((((...((((((........(((.((((((.........)))))).-----)))((((((((....(((........)))....))))))))).))))))))))............ ( -29.00) >DroSim_CAF1 5647 115 - 1 UAAUCAAUAUGCAAACAAACCAUUUGCCGCAUUAAUUACAAAGUAAUGCA-----GCAGCGAGCGUGAAAUGUAAAAAUAAACGGCAGAUGCUCGCGAUUUGCUUGAUGACUUGCCGGAG ..(((((...((((((........(((.((((((.........)))))).-----)))((((((((....(((........)))....))))))))).))))))))))............ ( -29.00) >DroEre_CAF1 5886 114 - 1 UAAUCAAUAUGCAAACAAACCAUUUGCCGCAUUAAUUACAAAGUAAUGCAG-----CAGCGAGCGUGAAAUGUAAAAAUAAACGGCAGAUGCUCGCGAUUUGCUUGAUGACUUGCCGGA- ..(((((...((((((........(((.((((((.........)))))).)-----))((((((((....(((........)))....))))))))).))))))))))...........- ( -29.00) >DroYak_CAF1 5892 119 - 1 UAAUCAAUAUGCAAACAAACCAUUUGCCGCAUUAAUUACAAAGUAAUGCAGCGCGGCAGCGAGCGUGAAAUGUAAAAAUAAACGGCAGAUGCUCGCGAUUUGCCUGAUGACUUGCCGGA- ...(((.((.((((((........((((((....(((((...))))).....))))))((((((((....(((........)))....))))))))).))))).)).))).........- ( -32.80) >consensus UAAUCAAUAUGCAAACAAACCAUUUGCCGCAUUAAUUACAAAGUAAUGCAG____GCAGCGAGCGUGAAAUGUAAAAAUAAACGGCAGAUGCUCGCGAUUUGCUUGAUGACUUGCCGGA_ ...(((.((.((((((............((((((.........)))))).........((((((((....(((........)))....))))))))).))))).)).))).......... (-25.10 = -25.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:14 2006