Locus 2255

Sequence ID 2L_DroMel_CAF1
Location 6,136,833 – 6,136,943
Length 110
Max. P 0.500000
window3616

overview

Window 6

Location 6,136,833 – 6,136,943
Length 110
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 87.48
Mean single sequence MFE -34.92
Consensus MFE -24.12
Energy contribution -24.76
Covariance contribution 0.64
Combinations/Pair 1.12
Mean z-score -1.71
Structure conservation index 0.69
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6136833 110 - 22407834
UUGGUGGAGCAGCAUAUUGGGGUCAUGCCA----GUGGAGU--GUCUGC----GCUGAAUGACCGCCAUGCGCAUGCCAAUGAUGAAGCAAUUAAUUUGCAAUUAAAUCGAUGAUUGCAA
((((((..((.(((...(((((((((..((----(((.((.--..)).)----)))).)))))).)))))))).))))))................(((((((((......))))))))) ( -37.60)
>DroSec_CAF1 5333 114 - 1
UUGGUCGAACAGCAUAUUGGGGUCAUGCCAGUCAGUGGAGU--GUCUGC----UCUGAAUGACCGCCAUGCGCAUGCCAAUGAUGAAGCAAUUAAUUUGCAAUUAAAUCGAUGAUUGCAA
(((((......(((...(((((((((..(((..((..(...--..)..)----)))).)))))).))))))....)))))................(((((((((......))))))))) ( -33.00)
>DroSim_CAF1 5478 114 - 1
UUGGUGAAGCAGCAUAUUGGGGUCAUGCCAGUCAGUGGAGU--GUCUGC----GCUGAAUGACCGCCAUGCGCAUGCCAAUGAUGAAGCAAUUAAUUUGCAAUUAAAUCGAUGAUUGCAA
(((((...((.(((...(((((((((..(((((((......--..))).----)))).)))))).))))))))..)))))................(((((((((......))))))))) ( -35.70)
>DroEre_CAF1 5729 109 - 1
UU---GGAGGAACAUAUUGGGGUCAGGCCAGGG--CUGAAU--GUCUGU----GCUGAAUGACCGCCAUGCGCAUGCCAAUGAUGAAGCCAUUAAUUUGCAAUUAAAUCGAUGAUUGCAA
..---...((..(((((((((((((...(((.(--(.(...--..).))----.)))..)))))((.....))...))))).)))...))......(((((((((......))))))))) ( -30.70)
>DroYak_CAF1 5700 116 - 1
UUC--GGAGGAGCAUAUUGGGGUCAUGCCGGUG--GAGGGUGGGUCUGGGUGGUCUGAAUGACCGCCAUGCGCAUGCCAAUGAUGAAGCCAUUAAUUUGCAAUUAAAUCGAUGAUUGCAA
...--((..(.((((...(((.((((.((....--..)))))).))).(((((((.....))))))))))).)...))..(((((....)))))..(((((((((......))))))))) ( -37.60)
>consensus
UUGGUGGAGCAGCAUAUUGGGGUCAUGCCAGUC_GUGGAGU__GUCUGC____GCUGAAUGACCGCCAUGCGCAUGCCAAUGAUGAAGCAAUUAAUUUGCAAUUAAAUCGAUGAUUGCAA
............((((((((((((((..(((...(((((.....))))).....))).))))))((.....))...))))).)))...........(((((((((......))))))))) (-24.12 = -24.76 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:12 2006