Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,136,124 – 6,136,241 |
Length | 117 |
Max. P | 0.769223 |
Location | 6,136,124 – 6,136,241 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.62 |
Mean single sequence MFE | -31.88 |
Consensus MFE | -23.38 |
Energy contribution | -24.06 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.12 |
Mean z-score | -2.11 |
Structure conservation index | 0.73 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.769223 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6136124 117 - 22407834 UUUACUAUCAUGACUUUGUUGCUGCCGCUGUCAUUUUCCAACAUCCCCAUUUUUUCCAGGGGUAAGGGUCUAUGGCAAUAGCUACCUA---CCUAUCUAUGGGGCUAGCACACAAAUCAC ..........(((.((((((((((((((((((((...((.....((((..........))))....))...)))))...)))......---((.......))))).)))).)))))))). ( -32.50) >DroSec_CAF1 4738 120 - 1 UUUACUAUCAUGACUUUGUUGCUGCCGCUGUCAUUUUCCAACUUCCCCAUUUUUUGCAGGGGUAAGGGUCUAUGGCAAUGGCUACCUACCACCUAUCUAUGGGGCUGGCACACAAAUCAC ..........(((.(((((((((((((.((((((...((.....((((..........))))....))...)))))).))))......((.((.......))))..)))).)))))))). ( -34.50) >DroSim_CAF1 4799 120 - 1 UUUACUAUCAUGACUUUGUUGCUGCCGCUGUCAUUUUCCAACUUCCCCAUUUUUUGCAGGGGUAAGGGUCUAUGGCAAUGGCUACCUACCACCUAUCUAUGGGGCUGGCACACAAAUCAC ..........(((.(((((((((((((.((((((...((.....((((..........))))....))...)))))).))))......((.((.......))))..)))).)))))))). ( -34.50) >DroEre_CAF1 5060 109 - 1 UUUACUAUCAUGACUUUGUUGCUGCUGCUGUCAUUUUCCAACUUCC---UUU-UUCCAGGGGUAAGGGUCUACAGCAAUAGCUAC-------CUAUCUAUGGGGCUGGCACACAAAUCAC ..........(((.(((((((((..((((((.....(((...((((---(..-....)))))...)))...))))))..((((.(-------(.......)))))))))).)))))))). ( -26.30) >DroYak_CAF1 5061 110 - 1 UUUACUAUCAUGACUUUGUUGCUGGCGCUGUCAUUUUCCAACUUCC---UUUAUGCCAGGGGUAAGGGUCUAUGGCAAUAGCUAC-------CUAUCUAUGGGGCUGGCGCACAAAUCAC ..........(((.((((((((..((((((((((...((....(((---((......)))))....))...)))))...)))..(-------(((....))))))..))).)))))))). ( -31.60) >consensus UUUACUAUCAUGACUUUGUUGCUGCCGCUGUCAUUUUCCAACUUCCCCAUUUUUUCCAGGGGUAAGGGUCUAUGGCAAUAGCUACCUA___CCUAUCUAUGGGGCUGGCACACAAAUCAC ..........(((.((((((((((((.(((((((...((.....((((..........))))....))...))))))((((.((.........)).))))).))).)))).)))))))). (-23.38 = -24.06 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:09 2006