Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,134,430 – 6,134,546 |
Length | 116 |
Max. P | 0.896122 |
Location | 6,134,430 – 6,134,546 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.41 |
Mean single sequence MFE | -20.92 |
Consensus MFE | -20.40 |
Energy contribution | -20.40 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.26 |
Structure conservation index | 0.98 |
SVM decision value | 0.99 |
SVM RNA-class probability | 0.896122 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6134430 116 - 22407834 GCGCCCGCGGCCCGUAAAAAUAA----ACUUCGAAAAAUACUGAGCAGCAGAAAAUAACAUAAAUUAAUAUUCAGUUAAAAAUGUGCAAAUAUUUCACGCACGCAUGUUGCUCCUUUUUC (.(((...))).)..........----.....((((((....((((((((..............(((((.....)))))....((((...........))))...)))))))).)))))) ( -20.00) >DroSec_CAF1 3095 116 - 1 GCGCCCGCGGCUCGUAAAAAUAA----ACUUCGAAAAAUACUGAGCAGCAGAAAAUAGCAUAAAUUAAUAUUCAGUUAAAAAUGUGCAAAUAUUUCACGCACGCAUGUUGCUCCUUUUUC (.(((...))).)..........----.....((((((....((((((((((((...(((((..(((((.....)))))...))))).....))))..(....).)))))))).)))))) ( -20.70) >DroSim_CAF1 3105 116 - 1 GCGCCCGCGGCUCGUAAAAAUAA----ACUUCGAAAAAUACUGAGCAGCAGAAAAUAACAUAAAUUAAUAUUCAGUUAAAAAUGUGCAAAUAUUUCACGCACGCAUGUUGCUCCUUUUUC (.(((...))).)..........----.....((((((....((((((((..............(((((.....)))))....((((...........))))...)))))))).)))))) ( -20.50) >DroEre_CAF1 3165 120 - 1 GCGCCCACGGCUCAGAAAAAUAACUGAAAAACGAAAAAUACUGAGCAGCAGAAAAUAACAUAAAUUAAUAUUCAGUUAAAAAUGUGCAAAUAUUUCACGCACGCAUGUUGCUCCUUUUUC ..(((...)))((((........)))).....((((((....((((((((..............(((((.....)))))....((((...........))))...)))))))).)))))) ( -22.80) >DroYak_CAF1 3272 116 - 1 GCGCCCACGGCUCAGAAAAAUAA----ACUUCGAAAAAUACUGAGCAGCAGAAAAUAACAUAAAUUAAUAUUCAGUUAAAAAUGUGCAAAUAUUUCACGCACGCAUGUUGCUCCUUUUUC (.(((...))).).(((......----..)))((((((....((((((((..............(((((.....)))))....((((...........))))...)))))))).)))))) ( -20.60) >consensus GCGCCCGCGGCUCGUAAAAAUAA____ACUUCGAAAAAUACUGAGCAGCAGAAAAUAACAUAAAUUAAUAUUCAGUUAAAAAUGUGCAAAUAUUUCACGCACGCAUGUUGCUCCUUUUUC (.(((...))).)...................((((((....((((((((..............(((((.....)))))....((((...........))))...)))))))).)))))) (-20.40 = -20.40 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:06 2006