Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,133,951 – 6,134,071 |
Length | 120 |
Max. P | 0.750292 |
Location | 6,133,951 – 6,134,071 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.08 |
Mean single sequence MFE | -25.18 |
Consensus MFE | -20.80 |
Energy contribution | -20.80 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.10 |
Mean z-score | -1.52 |
Structure conservation index | 0.83 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.750292 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6133951 120 + 22407834 UAGUACUCAUACUCAUUUGUACACAUCCAUAUUCUAGGUACAUCCAUGACCUGCAGUCGCAUUAAUUUAUAGCAAAAAUGCAUGUAAAUUACCUCGUGGCGAUAUUUUUCAUGCCAUCCA ..((((............))))..............((((...((((((..(((....))).((((((((((((....))).)))))))))..)))))).((......)).))))..... ( -23.10) >DroSec_CAF1 2641 117 + 1 UAGUG---GUACUCAUUUGGACACAUCCAUAUUCUAGGUACUUCCAUGACCUGCAGUCACAUUAAUUUAUAGCAAAAAUGCAUGUAAAUUACCUCGUGGCGAUAUUUUUCCUGCCAUCCG ..(((---(((......((((....)))).....(((((.(......))))))..(((((..((((((((((((....))).)))))))))....)))))...........))))))... ( -25.60) >DroSim_CAF1 2645 117 + 1 UAGUG---GUACUCAUUUGGACACAUCCAUAUUCUAGGUACUUCCAUGACCUGCAGUCGCAUUAAUUUAUAGCAAAAAUGCAUGUAAAUUACCUCGUGGCGAUAUUUUUCAUGCCAUCCG ..(((---(((......((((....)))).....(((((.(......))))))..(((((..((((((((((((....))).)))))))))....)))))...........))))))... ( -25.40) >DroEre_CAF1 2711 117 + 1 UAGUG---GCACUCAUUUGUGCACAUCCAUAUUCUAGGUACUUCCAUGACCUGCAGUCGCAUUAAUUUAUAGCAAAAAUGCAUGUAAAUUACCUCGUGGCGAUAUUUUUCAUGCCGUCCG ..(((---((((......)))).)))..........((((...((((((..(((....))).((((((((((((....))).)))))))))..)))))).((......)).))))..... ( -27.40) >DroYak_CAF1 2803 117 + 1 UAGUG---GUACUCAUUUGUACACAUCCAUGUUCUAGGUACUUGCAUGACCUGCAGUCGCAUUAAUUUAUAGUAAAAAUGCAUGUAAAUUACCUCGUGCCGAUAUUUUUCAUGCCAUCCG ..(((---((((......)))).)))..........((.....((((((......(((((((((((((((((((....))).)))))))))....))).)))).....))))))...)). ( -24.40) >consensus UAGUG___GUACUCAUUUGUACACAUCCAUAUUCUAGGUACUUCCAUGACCUGCAGUCGCAUUAAUUUAUAGCAAAAAUGCAUGUAAAUUACCUCGUGGCGAUAUUUUUCAUGCCAUCCG ........((((......))))..............((((...((((((..(((....))).((((((((((((....))).)))))))))..)))))).((......)).))))..... (-20.80 = -20.80 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:05 2006