Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 634,789 – 634,881 |
Length | 92 |
Max. P | 0.612639 |
Location | 634,789 – 634,881 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 83.36 |
Mean single sequence MFE | -18.40 |
Consensus MFE | -15.14 |
Energy contribution | -15.37 |
Covariance contribution | 0.22 |
Combinations/Pair | 1.12 |
Mean z-score | -1.52 |
Structure conservation index | 0.82 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.612639 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 634789 92 - 22407834 -----G------AAACAGAGGCUCCAAAUGAAGG-AGGAAGAGUUCAAGAUAAAUGAGCAGAAUUGGUUUGGCGAAAGGCGCAAUUCAACUGCCAAAAAACAA---------------U -----.------...(((...((((.......))-)).....(((((.......))))).((((((...((.(....).))))))))..)))...........---------------. ( -19.20) >DroVir_CAF1 32780 92 - 1 GCCACA------AAACUGCAGC-CGAAAUGAAAG-AAGAAAAGUUUCAGAUAAAUGAGCCGAA-UGGUUUGGCGAAAGGCGCAAUUCAACUGCCAAAAUAA------------------ ((....------....(((.((-((((((.....-.......)))))..........(((((.-....)))))....))))))........))........------------------ ( -16.29) >DroPse_CAF1 36927 107 - 1 -----G------AAACAGAGGC-CCAAAUGAACGAAGGAAAAGUUCAAGAUAAAUGAACGGAAUUGGUUUGGCGAAAGGCGCAAUUCAACUGCCAAAAAAAAACCCAACACACAUUCAU -----.------.......(((-.....(((((.........))))).............((((((...((.(....).))))))))....)))......................... ( -17.30) >DroSec_CAF1 23607 92 - 1 -----G------AAACAGAGGCUCCAAAUGAACG-AGGAAGAGUUCAAGAUAAAUGAGCAGAAUUGGUUUGGCGAAAGGCGCAAUUCAACUGCCAAAAAACAA---------------U -----.------...(((..((((....(((((.-.......)))))........)))).((((((...((.(....).))))))))..)))...........---------------. ( -19.20) >DroSim_CAF1 23471 98 - 1 -----GAAACAGAAACAGAGGCUCCAAAUGAACG-AGGAAGAGUUCAAGAUAAAUGAGCAGAAUUGGUUUGGCGAAAGGCGCAAUUCAACUGCCAAAAAACAA---------------U -----..........(((..((((....(((((.-.......)))))........)))).((((((...((.(....).))))))))..)))...........---------------. ( -19.20) >DroYak_CAF1 27128 92 - 1 -----G------AAACAGAGGCUCCAAAUGAAGG-AGGAAGAGUUCAAGAUAAAUGAGCAGAAUUGGUUUGGCGAAAGGCGCAAUUCAACUGCCAAAAAAUAA---------------U -----.------...(((...((((.......))-)).....(((((.......))))).((((((...((.(....).))))))))..)))...........---------------. ( -19.20) >consensus _____G______AAACAGAGGCUCCAAAUGAACG_AGGAAGAGUUCAAGAUAAAUGAGCAGAAUUGGUUUGGCGAAAGGCGCAAUUCAACUGCCAAAAAACAA_______________U ...................(((....................(((((.......))))).((((((...((.(....).))))))))....)))......................... (-15.14 = -15.37 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:30 2006