Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,132,849 – 6,132,960 |
Length | 111 |
Max. P | 0.617273 |
Location | 6,132,849 – 6,132,960 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.96 |
Mean single sequence MFE | -29.30 |
Consensus MFE | -24.83 |
Energy contribution | -24.63 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.07 |
Mean z-score | -1.35 |
Structure conservation index | 0.85 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.617273 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6132849 111 + 22407834 ACCCACUUUCUACCCCC---------GAGUCGCCAGUUGUGUCACACGCAAAACUGACAAAACAGCAAAAAUGACAACUGAAAUAUGCGAUGUUGGGCGAAAUUUGCGAGAGUCAAAAGG ....((((((.....((---------((((((((((((((((((..........))))....((.......)))))))))......))))).))))((((...))))))))))....... ( -25.20) >DroSec_CAF1 1564 112 + 1 ACCCACUUUCCGCCCCC--------GGAGUCGCCAGUUGUGUCACACGCAAAACUGACAAAACAGCAAAAAUGACAACUGAAAUAUGCGACGUUGGGCGAAAUUUGCGAGAGUCAAAAGG ..((......(((((..--------...((((((((((((((((..........))))....((.......)))))))))......)))))...)))))...(((((....).)))).)) ( -29.80) >DroSim_CAF1 1561 112 + 1 ACCCACUUUCCGCCCCC--------GGAGUCGCCAGUUGUGUCACACGCAAAACUGACAAAACAGCAAAAAUGACAACUGAAAUAUGCGACGUUGGGCGAAAUUUGCGAGAGUCAAAAGG ..((......(((((..--------...((((((((((((((((..........))))....((.......)))))))))......)))))...)))))...(((((....).)))).)) ( -29.80) >DroEre_CAF1 1623 111 + 1 ACCCAUUUUCUGCCCCC---------GAGUCGCCAGUUGUGUCACACGCAAAACUGACAAAACAGCAAAAAUGACAACUGAAAUAUGCGACGUUGGGCGAAAUUUGCGAGAGUCAAAAGG ..((..((((.((((..---------..((((((((((((((((..........))))....((.......)))))))))......)))))...))))))))(((((....).)))).)) ( -29.70) >DroYak_CAF1 1665 120 + 1 ACCCACUUUCUGCCCCCUUGCCCCCUGAGUCGCCAGUUGUGUCACACGCAAAACUGACAAAACAGCAAAAAUGACAACUGAAAUAUGCGACGUUGGGCGAAAUUUGCGAGAGUCAAAAGG ....((((((.((....((((((.....((((((((((((((((..........))))....((.......)))))))))......)))))...)))))).....))))))))....... ( -32.00) >consensus ACCCACUUUCUGCCCCC_________GAGUCGCCAGUUGUGUCACACGCAAAACUGACAAAACAGCAAAAAUGACAACUGAAAUAUGCGACGUUGGGCGAAAUUUGCGAGAGUCAAAAGG ..((......(((((.............((((((((((((((((..........))))....((.......)))))))))......)))))...)))))...(((((....).)))).)) (-24.83 = -24.63 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:01 2006