Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,132,692 – 6,132,811 |
Length | 119 |
Max. P | 0.999821 |
Location | 6,132,692 – 6,132,811 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.26 |
Mean single sequence MFE | -44.66 |
Consensus MFE | -40.36 |
Energy contribution | -40.08 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.09 |
Mean z-score | -1.83 |
Structure conservation index | 0.90 |
SVM decision value | 2.09 |
SVM RNA-class probability | 0.987797 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6132692 119 + 22407834 AAUGGUGGUGGCAUCUCAGCUCGGGGCUUGCUCU-UCGCAAUUCUGCUCGGCAAUGUCAAAAUUGUUUGUGGCAGUUGCCACCGCAGCUGCGUCGCCUGCCAGCGGAAAUGCCGUUGCAA ...(((((((((....(((((((((((((((...-..))))..(((((.((((((......))))))...)))))..))).))).))))).)))))).)))(((((.....))))).... ( -46.60) >DroSec_CAF1 1410 116 + 1 AAUGU---UGGCAUCUCAGCUCGGGGCUUGCUCU-UCGCAAUUCUGCUCGGCAAUGUCAAAAUUGUUUGUGGCAGUUGCCACCGCAGCUGCGUCGCCUGCCAGCGGAAAUGCCGUUUCAA ...((---.(((..(.(((((((((((((((...-..))))..(((((.((((((......))))))...)))))..))).))).))))).)..))).)).(((((.....))))).... ( -41.90) >DroSim_CAF1 1407 116 + 1 AAUGG---UGGCAUCUCAGCUCGGGGCUUGCUCU-UCGCAAUUCUGCUCGGCAAUGUCAAAAUUGUUUGUGGCAGUUGCCACCGCAGCUGCGUCGCCUGCCAGCGGAAAUGCCGUUGCAA ...((---((((....(((((((((((((((...-..))))..(((((.((((((......))))))...)))))..))).))).))))).))))))(((.(((((.....)))))))). ( -46.40) >DroEre_CAF1 1469 116 + 1 AAUGG---UGUCAUCUCAGCUCGGAGCUGGCUCC-UCGCAAUUCUGCUCGGCAAUGUCAAAAUUGUUUGUGGCAGUUGCCACCGCAGCUGCGUCGCCUGCCAGCGGAAAUGCCGUUGCAA ...((---.((((.(((......))).)))).))-..(((.(((((((.((((....((((....))))..((((((((....))))))))......))))))))))).)))........ ( -42.90) >DroYak_CAF1 1508 117 + 1 AAUGG---UGGCAUCUCAGCUCGGGGCUUGCUCUUUCGCAAUUCCGCUCGGCAAUGUCAAAAUUGUUUGUGGCAGUUGCCACCGCAGCUGCGUCGCCUGCCAGCGGAAAUGCCGUUGCAA ...((---((((....(((((((((((..((......))((((((((..((((((......)))))).)))).))))))).))).))))).))))))(((.(((((.....)))))))). ( -45.50) >consensus AAUGG___UGGCAUCUCAGCUCGGGGCUUGCUCU_UCGCAAUUCUGCUCGGCAAUGUCAAAAUUGUUUGUGGCAGUUGCCACCGCAGCUGCGUCGCCUGCCAGCGGAAAUGCCGUUGCAA .........(((((....((..((((....))))...))..(((((((.((((....((((....))))..((((((((....))))))))......))))))))))))))))....... (-40.36 = -40.08 + -0.28)
Location | 6,132,692 – 6,132,811 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.26 |
Mean single sequence MFE | -44.38 |
Consensus MFE | -42.58 |
Energy contribution | -42.82 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.03 |
Mean z-score | -2.38 |
Structure conservation index | 0.96 |
SVM decision value | 4.16 |
SVM RNA-class probability | 0.999821 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6132692 119 - 22407834 UUGCAACGGCAUUUCCGCUGGCAGGCGACGCAGCUGCGGUGGCAACUGCCACAAACAAUUUUGACAUUGCCGAGCAGAAUUGCGA-AGAGCAAGCCCCGAGCUGAGAUGCCACCACCAUU .......((((((((.((((((.((((((((....)))(((((....)))))..............)))))........((((..-...)))))))...))).))))))))......... ( -44.90) >DroSec_CAF1 1410 116 - 1 UUGAAACGGCAUUUCCGCUGGCAGGCGACGCAGCUGCGGUGGCAACUGCCACAAACAAUUUUGACAUUGCCGAGCAGAAUUGCGA-AGAGCAAGCCCCGAGCUGAGAUGCCA---ACAUU .......((((((((.((((((.((((((((....)))(((((....)))))..............)))))........((((..-...)))))))...))).)))))))).---..... ( -44.90) >DroSim_CAF1 1407 116 - 1 UUGCAACGGCAUUUCCGCUGGCAGGCGACGCAGCUGCGGUGGCAACUGCCACAAACAAUUUUGACAUUGCCGAGCAGAAUUGCGA-AGAGCAAGCCCCGAGCUGAGAUGCCA---CCAUU .......((((((((.((((((.((((((((....)))(((((....)))))..............)))))........((((..-...)))))))...))).)))))))).---..... ( -44.90) >DroEre_CAF1 1469 116 - 1 UUGCAACGGCAUUUCCGCUGGCAGGCGACGCAGCUGCGGUGGCAACUGCCACAAACAAUUUUGACAUUGCCGAGCAGAAUUGCGA-GGAGCCAGCUCCGAGCUGAGAUGACA---CCAUU .......((((((((.((((((((.((((((....)))(((((....)))))........)))...))))).)))......((..-((((....))))..)).))))))...---))... ( -40.70) >DroYak_CAF1 1508 117 - 1 UUGCAACGGCAUUUCCGCUGGCAGGCGACGCAGCUGCGGUGGCAACUGCCACAAACAAUUUUGACAUUGCCGAGCGGAAUUGCGAAAGAGCAAGCCCCGAGCUGAGAUGCCA---CCAUU .......((((((((.((((((((.((((((....)))(((((....)))))........)))...)))))...(((..((((......))))...)))))).)))))))).---..... ( -46.50) >consensus UUGCAACGGCAUUUCCGCUGGCAGGCGACGCAGCUGCGGUGGCAACUGCCACAAACAAUUUUGACAUUGCCGAGCAGAAUUGCGA_AGAGCAAGCCCCGAGCUGAGAUGCCA___CCAUU .......((((((((.((((((.((((((((....)))(((((....)))))..............)))))........((((......)))))))...))).))))))))......... (-42.58 = -42.82 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:00 2006