Locus 2246

Sequence ID 2L_DroMel_CAF1
Location 6,129,420 – 6,129,540
Length 120
Max. P 0.617814
window3602

overview

Window 2

Location 6,129,420 – 6,129,540
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 70.94
Mean single sequence MFE -42.83
Consensus MFE -15.07
Energy contribution -15.43
Covariance contribution 0.36
Combinations/Pair 1.24
Mean z-score -1.92
Structure conservation index 0.35
SVM decision value 0.17
SVM RNA-class probability 0.617814
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6129420 120 + 22407834
AGCUGCGGGAGCAACGAAUUCGGCAGGCAAUUGAACACUUGGCGGGUUUCCAGAGGACAAUCGUUGUCGCAGCAGCAGUUGAGAUCGCAUCUGCCUGCCUGAAGAUCACAGGAGCAGUAG
.((((((....)...((.(((((((((((..((....((..((.(((((((...))).))))(((((....))))).))..))....))..)))))))).)))..))......))))).. ( -41.80)
>DroVir_CAF1 5523 105 + 1
UGCUCUG---------------GCAAGCAGCUGAAUACCUGCAGCGUCUCCUGUGGACAAUCGGGAUCGCAGCAGCAAUUUAUAUCGCAUAGAUCGCUGUGCAAAUCACAGGCGCAGUAG
(((....---------------))).((((........)))).((((((((((........)))))..(((.((((.((((((.....)))))).)))))))........)))))..... ( -32.90)
>DroPse_CAF1 7778 120 + 1
AGCUGCGGCGGAGCCGCCACCUUCAGGCAGCUAAAGACCUGCCUGGUCUCUGUGGGACAAUCGCGAUCACAGCAGCAAUUCAGAUCGCACAUCUUCGACCGCAGAUCACAAGAGCAAAAA
..(((((((((((((((.....((((((((........)))))))).....)))).......((((((..............))))))....))))).))))))................ ( -43.64)
>DroSim_CAF1 1512 120 + 1
AGCUGCGGGAGCAACGAACUCGGCAGGCAAUUGAACACCUGGCGGGUUUCGGGAGGGCAAUCGUUGUCGCAGCAGCAGUUGAGAUCGCAUCUGCCUGCCUGAAGAUCGCAGGAGCAGUAA
.(((((....((....((((((.((((..........)))).))))))(((((.(((((...((.(((.((((....)))).))).))...))))).))))).....))....))))).. ( -46.10)
>DroYak_CAF1 1476 120 + 1
AGCUGCGGUAGCAAAGCACUCGGCAGGCAGUUGAAAACCUGACGGGUUUCAGGCGGGCAAUCGGUGUCGCAGCAGCAGUUGAGGUCGCAUCUGCCAGCCUGAAGAUCGCAGGAGCAGUAG
.(((((....((...((.....))..)).........((((.((..((((((((.((((....(((((.((((....)))).)).)))...)))).))))))))..)))))).))))).. ( -48.60)
>DroPer_CAF1 7738 120 + 1
AGCUGCGGCGGAGCCGACACCUUCAGGCAGCUAAAGACCUGCCUGGUCUCUGUGGGACAAUCGCGAUCACAGCAGCAAUUCAGAUCGCACAUCUUCGACCGCAGAUCACAAGAGCAAAAA
..(((((((((((((.(((...((((((((........))))))))....))).))......((((((..............))))))....))))).))))))................ ( -43.94)
>consensus
AGCUGCGGCAGCAACGAAAUCGGCAGGCAGCUGAACACCUGCCGGGUCUCCGGAGGACAAUCGCGAUCGCAGCAGCAAUUGAGAUCGCAUAUGCCCGCCUGAAGAUCACAGGAGCAGUAA
.(((((((...............((((..........))))....((((.....))))........))))))).((......((((.................))))......))..... (-15.07 = -15.43 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:58 2006