Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,127,630 – 6,127,720 |
Length | 90 |
Max. P | 0.923350 |
Location | 6,127,630 – 6,127,720 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 87.09 |
Mean single sequence MFE | -26.34 |
Consensus MFE | -22.60 |
Energy contribution | -22.28 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.25 |
Mean z-score | -1.84 |
Structure conservation index | 0.86 |
SVM decision value | 1.15 |
SVM RNA-class probability | 0.923350 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6127630 90 - 22407834 UUAAAAUGGAAAUGCACU--UUAAAAACCGUUGGCAAGCGGCCAGCUUAUUUUUGCGCUAUCCUCGCACGGUCACACUGUGCUUGAGCGGUA (((((.((......)).)--))))..(((((((((.....))))))..........(((......((((((.....))))))...)))))). ( -24.80) >DroSec_CAF1 45986 90 - 1 UUUAAAUGAAAAUACACU--UUAAAAACCGUUGGCAAGCGGGCAGUGUAUUUUUGCGCUCUCCUCGCACGGUCACAUUGUGCUUGAGCGGUA .......(((((((((((--.......(((((....)))))..))))))))))).(((((.....(((((((...)))))))..)))))... ( -29.10) >DroSim_CAF1 45794 90 - 1 UUUAAAUGAAAAUACACU--UUUAAAACCGUUGGCAAGCGGGCAGUGUAUUUUUGCGCUCUCCUCGCACGGUCACAUUGUGCUUGAGCGGUA .......(((((((((((--.......(((((....)))))..))))))))))).(((((.....(((((((...)))))))..)))))... ( -29.10) >DroEre_CAF1 54724 92 - 1 UUAAAAUGGGACUACACUCUUUCAAAAUCGUUGGCAAGCGGAAAGUGUAUAUUUGCGCUCUCCUCGCACGGUCACACUGAGUUUGAGCGGUA ......((..(........)..))..(((((...((((((((.((((((....)))))).))).....(((.....))).))))).))))). ( -22.10) >DroYak_CAF1 55620 92 - 1 UUAAAAUGAAAUUAAACUCUUAAAAAUUCGUUGGCAAGUGGACAGUGCAUUUUUGCGCUCUCCUCGCACGGUCACACUGUGCUUGAGCGGCA .............................((((.((((.(((.((((((....)))))).))).)((((((.....)))))))))..)))). ( -26.60) >consensus UUAAAAUGAAAAUACACU__UUAAAAACCGUUGGCAAGCGGACAGUGUAUUUUUGCGCUCUCCUCGCACGGUCACACUGUGCUUGAGCGGUA ..........................((((((.(...(.(((.((((((....)))))).))).)(((((((...))))))).).)))))). (-22.60 = -22.28 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:56 2006