Locus 2242

Sequence ID 2L_DroMel_CAF1
Location 6,121,296 – 6,121,392
Length 96
Max. P 0.912254
window3597

overview

Window 7

Location 6,121,296 – 6,121,392
Length 96
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 74.74
Mean single sequence MFE -23.97
Consensus MFE -15.61
Energy contribution -17.26
Covariance contribution 1.64
Combinations/Pair 1.23
Mean z-score -1.60
Structure conservation index 0.65
SVM decision value 1.08
SVM RNA-class probability 0.912254
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6121296 96 + 22407834
AUAAUAGCAAAUUAUGUGUCAAAAUAUGGUUAUGGAUACAUAUAAAAGGUGU---CCACUGUCGGC---UGUCGUGGCAACAUCUUCAAGUAUCGUUAUCCC
...(((((....((((((((...(((....))).))))))))...(((((((---((((.......---....))))..)))))))........)))))... ( -20.50)
>DroGri_CAF1 109185 81 + 1
UUAAUGGCAAAUUAUGUGUCAACAG--CUGCUUGGACGCAC--AGACGGACU---CUGCUGAUGGAACAUUUCGCUCCAACACCUACA--------------
....(((......((((..((.(((--(.....(..((...--...))..).---..)))).))..))))......))).........-------------- ( -16.00)
>DroSec_CAF1 39575 94 + 1
AUAAUAGCAAAUUAUGUGUCAACAUGUGGAUAUGGAUACAUAUAAAAGGUGU---CCAGUGGCGGC---UGCCGUGGCAACAUCUUCAGUUAUCGUUAUC--
...(((((....((((((((..((((....))))))))))))...(((((((---(((.((((...---.)))))))..)))))))........))))).-- ( -24.10)
>DroSim_CAF1 39925 96 + 1
AUAAUAGCAAAUUAUGUGUCAACAUGUGGAUAUGGAUACAUAUAAAAGGUGU---CCACUGGCGGC---UGCCGUGGCAACAUCUUCAGUUAUCGUUAUCCC
...(((((....((((((((..((((....))))))))))))...(((((((---((((.(((...---.)))))))..)))))))........)))))... ( -25.90)
>DroEre_CAF1 48240 91 + 1
AUAAUAGCAAAAUGUGUGUCAACAA--UGAUAUGGAUACAUAUAAAAGGUGU---CCACUGGCGGC---UGCCGUGGCAACAUCUCCAGUUGUCGUUAU---
...(((((.......((((((....--))))))((((((.........))))---))...((((((---((..(((....)))...)))))))))))))--- ( -26.80)
>DroYak_CAF1 49161 97 + 1
AUGAUAGCGAAAUAUGUGCCAACAA--UGAUAUGGAUACAUAUAAAAGGUGGACACCACUGGCGGC---UGCCGUGGCAACAUCAUUAGUUAUCGUUAUCCC
..((((((((.((((((((((....--.....))).)))))))....((((....((((.(((...---.)))))))...))))........)))))))).. ( -30.50)
>consensus
AUAAUAGCAAAUUAUGUGUCAACAU__GGAUAUGGAUACAUAUAAAAGGUGU___CCACUGGCGGC___UGCCGUGGCAACAUCUUCAGUUAUCGUUAUC__
...(((((....((((((((..............)))))))).....(((((...((((.((((.....))))))))..)))))..........)))))... (-15.61 = -17.26 +   1.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:53 2006