Locus 2241

Sequence ID 2L_DroMel_CAF1
Location 6,116,693 – 6,116,789
Length 96
Max. P 0.907792
window3596

overview

Window 6

Location 6,116,693 – 6,116,789
Length 96
Sequences 3
Columns 96
Reading direction reverse
Mean pairwise identity 78.79
Mean single sequence MFE -30.10
Consensus MFE -22.01
Energy contribution -22.40
Covariance contribution 0.39
Combinations/Pair 1.07
Mean z-score -1.85
Structure conservation index 0.73
SVM decision value 1.06
SVM RNA-class probability 0.907792
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6116693 96 - 22407834
GCCCUUGCUCCUCCGACGGCUCCACCGUUCAUUCCUCCGUUGGCCCCGCCCGCCGAUGGAGCAGUCAAUUGGAGGGGACCCUAAUUGCUUUCGGUU
(((.(((......))).)))...((((.......((((((((((.......)))))))))).((.(((((((.(....).)))))))))..)))). ( -33.60)
>DroSec_CAF1 34872 72 - 1
CCCCUUGCUCCU------------------------CCAUUGGCCCCGCCCGCCGAUGGAGCAGUCAAUUGGAGGGGCCCCUAAUUGCUUUCGGUU
(((((((((.((------------------------((((((((.......)))))))))).)))......))))))................... ( -27.20)
>DroSim_CAF1 35271 72 - 1
GCCCCUGCUCCU------------------------CCAUUGGCCCCGCCCGCCGAUGGAGCAGUCAAUUGGAGGGGCCCCUAAUUGCUUUCGGUU
(((((((((.((------------------------((((((((.......)))))))))).))).......)))))).................. ( -29.51)
>consensus
GCCCUUGCUCCU________________________CCAUUGGCCCCGCCCGCCGAUGGAGCAGUCAAUUGGAGGGGCCCCUAAUUGCUUUCGGUU
..(((((((((...(((((.....))))).........((((((.......))))))))))))).(((((((.(....).))))))).....)).. (-22.01 = -22.40 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:52 2006