Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,116,400 – 6,116,494 |
Length | 94 |
Max. P | 0.997855 |
Location | 6,116,400 – 6,116,494 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 69.06 |
Mean single sequence MFE | -20.47 |
Consensus MFE | -13.49 |
Energy contribution | -15.17 |
Covariance contribution | 1.68 |
Combinations/Pair | 1.25 |
Mean z-score | -1.82 |
Structure conservation index | 0.66 |
SVM decision value | 2.95 |
SVM RNA-class probability | 0.997855 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6116400 94 + 22407834 GAAUCCUUUGUAUCUUAUGGAUUUGGUCGGAAAUACUUUUCAUUUUUGCAACAUUCUUUUUGACGGCGCUUAAUGAAUUGCUUCGGUAGUUCGU-------------- ((((((............)))))).((((((((....)))).............((.....)))))).....(((((((((....)))))))))-------------- ( -20.80) >DroSec_CAF1 34547 104 + 1 AACCCCUUUGUAUCUUAUGAAUUUGGUCGAAUAUGUUUUGCGUUUUCGCAGCAUUCUUUUUGACAG--CUUAAUGAAUUGCAUCUUUAGUUCCGUAUAUUAUAUU--U ........((((...((((......((((((.((((..((((....))))))))....))))))..--......((((((......))))))))))...))))..--. ( -17.10) >DroSim_CAF1 34955 95 + 1 -----------UUCUUAUGGAUGUGGUCGAAAAUACUUUGCGUUUUCGCAACAUUCUUUUUGACAG--CUUAAUGAAUUGCUUCGGUAAUUUCAAAUAUUCUAUGUAU -----------....((((((.((.((((((((....(((((....))))).....)))))))).)--)....((((((((....)))).)))).....))))))... ( -23.50) >consensus _A__CCUUUGUAUCUUAUGGAUUUGGUCGAAAAUACUUUGCGUUUUCGCAACAUUCUUUUUGACAG__CUUAAUGAAUUGCUUCGGUAGUUCCA_AUAUU_UAU___U .........................((((((((....(((((....))))).....))))))))..........(((((((....)))))))................ (-13.49 = -15.17 + 1.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:51 2006