Locus 224

Sequence ID 2L_DroMel_CAF1
Location 633,374 – 633,472
Length 98
Max. P 0.552067
window358

overview

Window 8

Location 633,374 – 633,472
Length 98
Sequences 3
Columns 101
Reading direction forward
Mean pairwise identity 91.42
Mean single sequence MFE -15.57
Consensus MFE -15.29
Energy contribution -15.30
Covariance contribution 0.01
Combinations/Pair 1.13
Mean z-score -1.17
Structure conservation index 0.98
SVM decision value 0.04
SVM RNA-class probability 0.552067
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 633374 98 + 22407834
AUUUCUGAUAUUUGCAACCUGAAAAUAUCAAAACUAUCUCAU---AUAAAUAUAUAACUUUUUCCAGAGAUUACGCAUUUUCUUUCAGUGCUUUGAGCUUU
.....((((((((.(.....).)))))))).......((((.---............(((......))).....(((((.......)))))..)))).... ( -11.50)
>DroSec_CAF1 22231 101 + 1
AUUUUCGAUGUUUGCAACCUGUAAAUAUCAAAACUAUCUCAUUAAAUAAAUAUACACCUUUUUCAAGAGAUUACGCAUUUUCUUUGAGUGCUUUGGGCUUU
......(((((((((.....)))))))))........((((................((((....)))).....((((((.....))))))..)))).... ( -16.90)
>DroSim_CAF1 22061 101 + 1
AUUUUCGAUAUUUGCAACCUGUAAAUAUCAAAACUAUCUCAUUAAAUAAAUAUACACCUUUUUCAGGAGAUUACGCAUUUUCUUUGAGUGCUUUGGGCUUU
......(((((((((.....)))))))))........((((...............(((.....))).......((((((.....))))))..)))).... ( -18.30)
>consensus
AUUUUCGAUAUUUGCAACCUGUAAAUAUCAAAACUAUCUCAUUAAAUAAAUAUACACCUUUUUCAAGAGAUUACGCAUUUUCUUUGAGUGCUUUGGGCUUU
......(((((((((.....)))))))))........((((................((((....)))).....((((((.....))))))..)))).... (-15.29 = -15.30 +   0.01) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:29 2006