Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 633,374 – 633,472 |
Length | 98 |
Max. P | 0.552067 |
Location | 633,374 – 633,472 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 91.42 |
Mean single sequence MFE | -15.57 |
Consensus MFE | -15.29 |
Energy contribution | -15.30 |
Covariance contribution | 0.01 |
Combinations/Pair | 1.13 |
Mean z-score | -1.17 |
Structure conservation index | 0.98 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.552067 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 633374 98 + 22407834 AUUUCUGAUAUUUGCAACCUGAAAAUAUCAAAACUAUCUCAU---AUAAAUAUAUAACUUUUUCCAGAGAUUACGCAUUUUCUUUCAGUGCUUUGAGCUUU .....((((((((.(.....).)))))))).......((((.---............(((......))).....(((((.......)))))..)))).... ( -11.50) >DroSec_CAF1 22231 101 + 1 AUUUUCGAUGUUUGCAACCUGUAAAUAUCAAAACUAUCUCAUUAAAUAAAUAUACACCUUUUUCAAGAGAUUACGCAUUUUCUUUGAGUGCUUUGGGCUUU ......(((((((((.....)))))))))........((((................((((....)))).....((((((.....))))))..)))).... ( -16.90) >DroSim_CAF1 22061 101 + 1 AUUUUCGAUAUUUGCAACCUGUAAAUAUCAAAACUAUCUCAUUAAAUAAAUAUACACCUUUUUCAGGAGAUUACGCAUUUUCUUUGAGUGCUUUGGGCUUU ......(((((((((.....)))))))))........((((...............(((.....))).......((((((.....))))))..)))).... ( -18.30) >consensus AUUUUCGAUAUUUGCAACCUGUAAAUAUCAAAACUAUCUCAUUAAAUAAAUAUACACCUUUUUCAAGAGAUUACGCAUUUUCUUUGAGUGCUUUGGGCUUU ......(((((((((.....)))))))))........((((................((((....)))).....((((((.....))))))..)))).... (-15.29 = -15.30 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:29 2006