Locus 2239

Sequence ID 2L_DroMel_CAF1
Location 6,105,008 – 6,105,107
Length 99
Max. P 0.730863
window3594

overview

Window 4

Location 6,105,008 – 6,105,107
Length 99
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 88.16
Mean single sequence MFE -22.31
Consensus MFE -15.96
Energy contribution -16.64
Covariance contribution 0.68
Combinations/Pair 1.10
Mean z-score -2.03
Structure conservation index 0.72
SVM decision value 0.42
SVM RNA-class probability 0.730863
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6105008 99 + 22407834
CUUCCUGUCGUUUUUGCGGCUUCUGU----------UGGUGGAACACUACACACUUACAGGUGAUUCAACCCCUAAAAGCACAAGCAAACAUCCCCCAUAA-AAAAUUCU
............(((((.((((.((.----------.(((.(((((((...........)))).))).)))..)).))))....)))))............-........ ( -16.70)
>DroSec_CAF1 23299 99 + 1
CUUCCUGUCGUUUUUGGGGCUUCUGU----------UGGUGGAACACUACACACUUACAGGUGAUUCAACCCCUAAAAGCACAAACAAACAUCCCCCAUAA-AAAAUUCU
.....(((.((((((((((.....((----------((((((....)))).((((....))))...)))))))))))))))))..................-........ ( -22.00)
>DroSim_CAF1 23584 99 + 1
CUUCCUGUCGUUUUUGGGGCUUCUGU----------UGGUGGAACACUACACACUUACAGGUGAUUCAACCCCUAAGAACACAAGCAAACAUCCCCCAUAA-AAAAUUCC
.....(((.((((((((((.....((----------((((((....)))).((((....))))...)))))))))))))))))..................-........ ( -22.10)
>DroEre_CAF1 30942 108 + 1
CUUCCUGUCGUUUUUGGGGCUUCUGUUGCAACAUGUUGGUGGAGCACAACACACUUACAGGUGAUUCAACCCCUAAAAGCACAACCAAACAUCCCCCAUA--AAAAUUAU
.....(((.((((((((((.((..((..(....(((.((((..........)))).))).)..))..)).))))))))))))).................--........ ( -24.80)
>DroYak_CAF1 31635 109 + 1
CUUCCUGUCGUUUUUGGGGCUUCUGUUGCAACAUGUUGGUGGAACACAACACACUUACAGGUGAUUCCACCCCUAAACGC-CAACCAAACAUCCCCCAAAAAAAAAUUAC
..........(((((((((....((((......((((((((((((((.............))).)))))))....)))).-......))))..)))))))))........ ( -25.94)
>consensus
CUUCCUGUCGUUUUUGGGGCUUCUGU__________UGGUGGAACACUACACACUUACAGGUGAUUCAACCCCUAAAAGCACAACCAAACAUCCCCCAUAA_AAAAUUCU
.....(((.((((((((((...................((((....)))).((((....)))).......)))))))))))))........................... (-15.96 = -16.64 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:50 2006