| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,084,067 – 6,084,173 |
| Length | 106 |
| Max. P | 0.996712 |
| Location | 6,084,067 – 6,084,173 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 58.41 |
| Mean single sequence MFE | -23.67 |
| Consensus MFE | -9.62 |
| Energy contribution | -10.18 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.91 |
| Structure conservation index | 0.41 |
| SVM decision value | 2.74 |
| SVM RNA-class probability | 0.996712 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6084067 106 + 22407834 -------UCCCUAAAAAC-AUACCUCCACAGCUAC----UUUACCAGCUGUUUCAUGGUGACUCAAAGCU--CAAUUAGCUUAAGAAUCGACCUUUUGAGUCAUCAUGACAAUAGGCUAA -------..((((.....-........((((((..----......)))))).((((((((((((((((((--.....)))))(((.......))).)))))))))))))...)))).... ( -31.70) >DroWil_CAF1 87582 99 + 1 AGGGAACUCACUUAA----ACACCU-----GUUCGCACUUUUGUAA-----UUCCUUGUGACUCAC--CC--GAAGACUCUUGAGAAUCACCCUUUUGACUCAUCGUGACCAUU---CAA .(((...((((...(----((....-----))).(((....)))..-----......))))....)--))--(((...((.(((((.(((......))).)).))).))...))---).. ( -13.70) >DroAna_CAF1 56640 98 + 1 ----AAUUCCCUAAAAACGACACCU-----GUUGG----UCUACAA-----UUCCUGAUGACUCAAAUAUCUACAUUGGCUUAUGAACCGA----UUGAGUCAUCGUGACAAUAGGCCAA ----.....................-----.((((----((((...-----.((.((((((((((.........(((((........))))----))))))))))).))...)))))))) ( -25.60) >consensus ____AA_UCCCUAAAAAC_ACACCU_____GUUAG____UUUACAA_____UUCCUGGUGACUCAAA_CU__AAAUUAGCUUAAGAAUCGACCUUUUGAGUCAUCGUGACAAUAGGCCAA ....................................................((.(((((((((((.............................))))))))))).))........... ( -9.62 = -10.18 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:47 2006