Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,080,116 – 6,080,212 |
Length | 96 |
Max. P | 0.579249 |
Location | 6,080,116 – 6,080,212 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 99.31 |
Mean single sequence MFE | -19.33 |
Consensus MFE | -18.07 |
Energy contribution | -18.07 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.65 |
Structure conservation index | 0.93 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.579249 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6080116 96 - 22407834 CAGAGAAUAGAACUACAGUAAUGACUUUAUUCCAUCUGAUGUAAUUCCUAUUAUUGCGAUUUCUAUAGUGCAAUAAAUUUGUUUACAAAGAUGCUA ....(((((((....((....))..)))))))(((((..(((((......(((((((.(((.....))))))))))......))))).)))))... ( -18.20) >DroSec_CAF1 41846 96 - 1 CAGGGAAUAGAACUACAGUAAUGACUUUAUUCCAUCUGAUGUAAUUCCUAUUAUUGCGAUUUCUAUAGUGCAAUAAAUUUGUUUACAAAGAUGCUA ...((((((((....((....))..))))))))((((..(((((......(((((((.(((.....))))))))))......))))).)))).... ( -19.90) >DroSim_CAF1 42495 96 - 1 CAGGGAAUAGAACUACAGUAAUGACUUUAUUCCAUCUGAUGUAAUUCCUAUUAUUGCGAUUUCUAUAGUGCAAUAAAUUUGUUUACAAAGAUGCUA ...((((((((....((....))..))))))))((((..(((((......(((((((.(((.....))))))))))......))))).)))).... ( -19.90) >consensus CAGGGAAUAGAACUACAGUAAUGACUUUAUUCCAUCUGAUGUAAUUCCUAUUAUUGCGAUUUCUAUAGUGCAAUAAAUUUGUUUACAAAGAUGCUA ....(((((((....((....))..)))))))(((((..(((((......(((((((.(((.....))))))))))......))))).)))))... (-18.07 = -18.07 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:46 2006