Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,075,496 – 6,075,593 |
Length | 97 |
Max. P | 0.949063 |
Location | 6,075,496 – 6,075,593 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 85.35 |
Mean single sequence MFE | -17.93 |
Consensus MFE | -17.30 |
Energy contribution | -17.30 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.52 |
Structure conservation index | 0.96 |
SVM decision value | 1.39 |
SVM RNA-class probability | 0.949063 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6075496 97 + 22407834 GAAAGCGAAAGCAUAAAGCACAGCUGAAAAAUAAGCCCCACGCAUUUGGGGUUGUCCGCCUCUAUUCCCCUUCCCAUUCCCCUUCCCAAUCCCCUUC (((.((....))..........((.((......(((((((......))))))).)).)).....))).............................. ( -17.40) >DroSec_CAF1 37234 79 + 1 GAAAGCGAAAGCAUAAAGCACAGCUGAAAAAUAAGCCCCACGCAUUUGGGGUUGUCCGCCUCUUU------------------UCCAAAUCCCCUUC ((((((....))..........((.((......(((((((......))))))).)).))....))------------------))............ ( -18.20) >DroSim_CAF1 37886 79 + 1 GAAAGCGAAAGCAUAAAGCACAGCUGAAAAAUAAGCCCCACGCAUUUGGGGUUGUCCGCCUCUUU------------------UCCAAAUCCCCUUC ((((((....))..........((.((......(((((((......))))))).)).))....))------------------))............ ( -18.20) >consensus GAAAGCGAAAGCAUAAAGCACAGCUGAAAAAUAAGCCCCACGCAUUUGGGGUUGUCCGCCUCUUU__________________UCCAAAUCCCCUUC ....((....))..........((.((......(((((((......))))))).)).))...................................... (-17.30 = -17.30 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:43 2006