Locus 2232

Sequence ID 2L_DroMel_CAF1
Location 6,072,712 – 6,072,806
Length 94
Max. P 0.619232
window3586

overview

Window 6

Location 6,072,712 – 6,072,806
Length 94
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 76.44
Mean single sequence MFE -24.05
Consensus MFE -10.20
Energy contribution -10.78
Covariance contribution 0.58
Combinations/Pair 1.07
Mean z-score -2.09
Structure conservation index 0.42
SVM decision value 0.17
SVM RNA-class probability 0.619232
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6072712 94 + 22407834
UUUUCACUUACUUCUCCACAGCUCACAACAGAGCGCAUUCAGCAAGGUUAUGCUGGCUAAUGCCGCCAUCUCUGCCUUGCGUUUGCACCAGAGA
............((((....((((......))))(((..(.(((((((.(((.((((....)))).)))....))))))))..)))....)))) ( -31.90)
>DroVir_CAF1 58860 94 + 1
CUUUAUUUUAUGUCUUUUUAGCUCACAGCAGAGCGCUUUCAACAAGGUGUUGCUUGCGAAUGCGGCCAUCUCGGCGCUGCGUUUGCAUCAGCGU
....................((((......))))(((((....)))))((((..(((((((((((((......).)))))))))))).)))).. ( -29.50)
>DroPse_CAF1 39941 93 + 1
UUCA-AAUAUCUUCUCCACAGUUCACAACAGAGCUCCUUCACCAAGGUUCUGUUGGCCAAUGCGGCCAUCUCUGCCCUGCGCCUGCAUCAACGU
....-...............(((..((((((((((..........))))))))))....(((((((((.........)).))).)))).))).. ( -20.10)
>DroEre_CAF1 35929 94 + 1
UUUUAAUUAACUUCACCACAGCUCACAACAGAGCGCAUUCAGCAAGGUCCUGCUGGCCAAUGCCGCCAUCUCUGCCUUGCGCUUGCACCAGAGA
...........(((......((((......))))(((....(((((((...(.((((.......)))).)...)))))))...)))....))). ( -27.50)
>DroAna_CAF1 41518 93 + 1
CAUUCUUUGUCU-UCCUGCAGUUCACAACAAAGCUCCUUUAGCAAGGUCCUUCUGGCCAAUGCCGCCAUCUCAGCGCUGCGCUUGCACCAACGC
............-....(((((.(......(((..((((....))))..))).((((.......)))).....).))))).............. ( -15.50)
>DroPer_CAF1 39928 93 + 1
UUCA-UAUAUCUUCUCCACAGUUCACAACAGAGCUCCUUCACCAAGGUUCUGUUGGCCAAUGCGGCCAUCUCUGCCCUGCGUCUUCAUCAACGU
....-...........(.(((..((.(((((((((..........)))))))))((((.....)))).....))..))).)............. ( -19.80)
>consensus
UUUU_AUUAACUUCUCCACAGCUCACAACAGAGCGCCUUCAGCAAGGUUCUGCUGGCCAAUGCCGCCAUCUCUGCCCUGCGCUUGCACCAACGU
....................((((......))))........((.(((...(.((((.......)))).)...))).))............... (-10.20 = -10.78 +   0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:43 2006