Locus 2231

Sequence ID 2L_DroMel_CAF1
Location 6,072,598 – 6,072,689
Length 91
Max. P 0.719255
window3585

overview

Window 5

Location 6,072,598 – 6,072,689
Length 91
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 79.62
Mean single sequence MFE -25.87
Consensus MFE -19.50
Energy contribution -19.92
Covariance contribution 0.42
Combinations/Pair 1.26
Mean z-score -1.29
Structure conservation index 0.75
SVM decision value 0.40
SVM RNA-class probability 0.719255
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6072598 91 + 22407834
UCGCAUAGAUUCCGCGCUAUGGGCACUACGUCUGCUGGUCAUCUUCUUCACCGUCAGCUACGUGCUGCCCAUCUUUACGUGAGUACACG---CG------
............((((..(((((((.((((((((.((((.(......).)))).)))..))))).)))))))...(((....)))..))---))------ ( -30.00)
>DroVir_CAF1 58136 100 + 1
CCGCAUCGAUUCGGCACUUUGGGCGUUACGUCUGCUAGUUAUCUUCUUUACUGUCAGCUAUGUGUUGCCCAUAUUCACGUAAGUACUUAAAAAGUUUGUA
(((........))).((((((((((.((((((((.((((..........)))).)))..))))).)))))......((....))......)))))..... ( -21.00)
>DroSec_CAF1 34393 91 + 1
UCGCAUCGAUUCCGCGCUAUGGGCACUACGUCUGCUGGUCAUCUUCUUCACCGUCAGCUAUGUGCUGCCCAUCUUUACGUGAGUAGACG---CG------
............((((..(((((((.((((((((.((((.(......).)))).)))..))))).))))))).(((((....)))))))---))------ ( -30.00)
>DroSim_CAF1 35032 91 + 1
UCGCAUCGAUUCCGCGCUAUGGGCACUACGUCUGCUGGUCAUCUUCUUCACCGUCAGCUACGUGCUGCCCAUCUUUACGUGAGUAGACG---CG------
............((((..(((((((.((((((((.((((.(......).)))).)))..))))).))))))).(((((....)))))))---))------ ( -31.80)
>DroMoj_CAF1 56664 89 + 1
UCGCAUCGACUCGGCGCUGUGGGCGCUGCGUCUGCUUGUCAUCUUCUUUACCGUUAGCUAUGUGUUGCCCAUAUUCACGUGAGUGUAUA-----------
..((..((...))..))((((((((..((((..(((...................))).))))..))))))))..(((....)))....----------- ( -23.31)
>DroAna_CAF1 41399 85 + 1
CCGGAUCGACUCUGCCCUCUGGGCCCUGCGUCUUCUGGCAAUCUUCUUCACCGUCAGCUAUGUUCUGCCCAUUUUCACGUGAGUA---------------
.((((.....)))).....(((((...((((...(((((.............)))))..))))...))))).....((....)).--------------- ( -19.12)
>consensus
UCGCAUCGAUUCCGCGCUAUGGGCACUACGUCUGCUGGUCAUCUUCUUCACCGUCAGCUAUGUGCUGCCCAUCUUCACGUGAGUACACG___CG______
........((((.(((..(((((((.((((((((.((((.(......).)))).)))..))))).))))))).....)))))))................ (-19.50 = -19.92 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:42 2006