Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,065,927 – 6,066,023 |
Length | 96 |
Max. P | 0.587364 |
Location | 6,065,927 – 6,066,023 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 90.00 |
Mean single sequence MFE | -23.73 |
Consensus MFE | -17.02 |
Energy contribution | -17.58 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.04 |
Mean z-score | -1.87 |
Structure conservation index | 0.72 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.587364 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6065927 96 + 22407834 CCAACGGAACAGCUGUUGCAAGAACUCGACCACUCUCACUCGCUUGGUUAUCGAUAUCAGGCAAAUGUUAUCGAAAAGCAAGUGGUCUUGCAAUCA ..(((((.....)))))((((((....((......))..(((((((.((.((((((.((......)).)))))).)).)))))))))))))..... ( -27.80) >DroSec_CAF1 27666 96 + 1 CCAACGGAACAGCUGUUGCAAAAACUCGAACACUCUCACUCGCUUGGCUAUCGAUAUUAGGCAAGUGUUAUCGAAAAGCCAGUGGUCAUGCAAUCA ..(((((.....)))))(((.......((......))..(((((.((((.((((((............))))))..)))))))))...)))..... ( -20.40) >DroSim_CAF1 28258 96 + 1 CCAACGGAACAGCUGUUGCAAAAACUCGAACACUCUCACUCGCUUGGCUAUCGAUAUUAGGCAAGUGUUAUCGAAAAGCCAGUGGUCAUGCAAUCA ..(((((.....)))))(((.......((......))..(((((.((((.((((((............))))))..)))))))))...)))..... ( -20.40) >DroEre_CAF1 29078 96 + 1 CCAACGGAACAGCUGUUGCCAAAACUCGACCACUCUCACUGGAUUCGGUAUCGAUAUCAGAUAAUUGUUAUCGAAAAACAAGUGGUCAUGCAAUCA .((((((.....)))))).........(((((((...((((....)))).((((((.(((....))).))))))......)))))))......... ( -24.60) >DroYak_CAF1 29007 96 + 1 CCAACGGAACAGCUGUUGCAAAAACUCGACCACUCUUACUCGCUUCGAUAUCGAUAUCAGCUUAUUGUUAUCGAAAAACAAGUGGUCAUAAAAUCA .((((((.....)))))).........(((((((.........(((((((.(((((......))))).))))))).....)))))))......... ( -25.44) >consensus CCAACGGAACAGCUGUUGCAAAAACUCGACCACUCUCACUCGCUUGGCUAUCGAUAUCAGGCAAGUGUUAUCGAAAAGCAAGUGGUCAUGCAAUCA .((((((.....)))))).........(((((((.......((((.....((((((.((......)).)))))).)))).)))))))......... (-17.02 = -17.58 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:41 2006