Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,056,255 – 6,056,411 |
Length | 156 |
Max. P | 0.825841 |
Location | 6,056,255 – 6,056,371 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.44 |
Mean single sequence MFE | -34.20 |
Consensus MFE | -25.71 |
Energy contribution | -25.77 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.13 |
Mean z-score | -1.44 |
Structure conservation index | 0.75 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.507493 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6056255 116 - 22407834 AGAGUGCAUGGGGUAAGGGUCCUUUGUGGGCUAUUCCCAUGCGGUGAUUCAUAUCUCUUGCAUGGCAUGGCAGUAAAUUUUGCUUCAUUAAAAUCGGAUGACUGUAGAAUUGGGCA---- .(.(((((.((((((.(((((((.((((((.....)))))).)).))))).)))))).)))))..)...((....((((((((.(((((.......)))))..))))))))..)).---- ( -37.10) >DroSec_CAF1 18060 120 - 1 AGAGUGCAUGGGGUAAAGGUCCUUUGUGGGCUAUUCCCAUGCGGUGAUUCAUAUCUCUUGCAUGGCAUGGCCGUAAAUUUUGCUUCAUUAAAAUCGGAUGACUGUAGAAUUGGGCAGUAU ((((.((((((((....(((((.....)))))..))))))))((....))....))))((((((((...))))).((((((((.(((((.......)))))..))))))))..))).... ( -37.60) >DroSim_CAF1 19122 120 - 1 AGAGUGCAUGGGGUAAAGGUCCUUUGUGGGCUAUUCCCAUGCGGUGAUUCAUAUCUCUUGCAUGGCAUGGCAGUAAAUUUUGCUUCAUUAAAAUCGGAUGACUGUAGAAUUGGGCAGUAU .(.(((((.((((((..((((((.((((((.....)))))).)).))))..)))))).)))))..)...((....((((((((.(((((.......)))))..))))))))..))..... ( -34.40) >DroEre_CAF1 19280 119 - 1 AGAGUACAUGGG-AAAGGGUCCUUUGUGGGCUAUUUCUAUGCGGUGAUUCAUAUGAUUUGCAUGUUAUGGCAGUACAUUUUCCUACAUACAAAUCGGAUAACUGUUUAAUUGGGUAGUAU ...(((((((((-((..(((((.....))))).)))))))(((((.((((....((((((.((((...((.((.....)).)).)))).)))))))))).)))))...........)))) ( -27.70) >consensus AGAGUGCAUGGGGUAAAGGUCCUUUGUGGGCUAUUCCCAUGCGGUGAUUCAUAUCUCUUGCAUGGCAUGGCAGUAAAUUUUGCUUCAUUAAAAUCGGAUGACUGUAGAAUUGGGCAGUAU ....(((((((((....(((((.....)))))..))))))(((((.((((........(((...))).(((((......)))))...........)))).)))))........))).... (-25.71 = -25.77 + 0.06)
Location | 6,056,291 – 6,056,411 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.07 |
Mean single sequence MFE | -35.36 |
Consensus MFE | -27.80 |
Energy contribution | -29.36 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.17 |
Mean z-score | -1.82 |
Structure conservation index | 0.79 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.825841 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6056291 120 - 22407834 CAAUUAGUCGCAGAUUAAAAGUGUGUGCGGUGUUCAUGAUAGAGUGCAUGGGGUAAGGGUCCUUUGUGGGCUAUUCCCAUGCGGUGAUUCAUAUCUCUUGCAUGGCAUGGCAGUAAAUUU ...((((((...)))))).......(((.((((.((((..((((.((((((((....(((((.....)))))..))))))))((....))....))))..)))))))).)))........ ( -39.20) >DroSec_CAF1 18100 120 - 1 CAAUUAGUCGCAGAUUAAAAGUGUGUACCGUGUUCAUGAUAGAGUGCAUGGGGUAAAGGUCCUUUGUGGGCUAUUCCCAUGCGGUGAUUCAUAUCUCUUGCAUGGCAUGGCCGUAAAUUU .........(((.((.....)).))).((((((.((((..((((.((((((((....(((((.....)))))..))))))))((....))....))))..)))))))))).......... ( -37.10) >DroSim_CAF1 19162 120 - 1 CAAUUAGUCGCAGAUUAAAAGUGUGUACCGUGUUCAUGAUAGAGUGCAUGGGGUAAAGGUCCUUUGUGGGCUAUUCCCAUGCGGUGAUUCAUAUCUCUUGCAUGGCAUGGCAGUAAAUUU ......((((((.((.....)).))).((((((....((((((((((((((((....(((((.....)))))..))))))))....)))).))))....))))))...)))......... ( -37.20) >DroEre_CAF1 19320 119 - 1 CAAUUAGUCGCAGAUUAAAUGUGUACACCGUGUUCAUGAUAGAGUACAUGGG-AAAGGGUCCUUUGUGGGCUAUUUCUAUGCGGUGAUUCAUAUGAUUUGCAUGUUAUGGCAGUACAUUU .........((((((((.(((.((.((((((((....(((((..((((.(((-(.....)))).))))..)))))...)))))))))).))).)))))))).(((....)))........ ( -36.20) >DroYak_CAF1 19299 113 - 1 CAAUUAGUCGCAGAUUAAAAGUGUGUACCGUGUUUAUAAUAGAGUAUGUGGG-AAGGGGUCCUUUGUUGGCUAUUCCUAUGCGGUAAUCCAUAUGUUUUGCAUGGUAUGGCAGU------ ......((((((.((.....)).)))(((((((....((((..((..(((((-((..((.((......)))).)))))))))((....))...))))..)))))))..)))...------ ( -27.10) >consensus CAAUUAGUCGCAGAUUAAAAGUGUGUACCGUGUUCAUGAUAGAGUGCAUGGGGUAAGGGUCCUUUGUGGGCUAUUCCCAUGCGGUGAUUCAUAUCUCUUGCAUGGCAUGGCAGUAAAUUU ......((((((.((.....)).)))(((((((....((((((((((((((((....(((((.....)))))..))))))))....)))).))))....)))))))..)))......... (-27.80 = -29.36 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:38 2006