Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,029,495 – 6,029,587 |
Length | 92 |
Max. P | 0.500000 |
Location | 6,029,495 – 6,029,587 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 77.39 |
Mean single sequence MFE | -25.75 |
Consensus MFE | -13.85 |
Energy contribution | -14.47 |
Covariance contribution | 0.62 |
Combinations/Pair | 1.20 |
Mean z-score | -1.93 |
Structure conservation index | 0.54 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6029495 92 - 22407834 GCCAGCUGAAGAAUCUUGAAAGAUUCCACGGAAUUUGGUGGAAUUUUAUAUGAGAUUUUUUAU-------AUUGGAUUUCUAUGGAUUCUAGAUGGA-UU .(((..((((((((((((.((((((((((........))))))))))...)))))))))))).-------.(((((.((.....)).))))).))).-.. ( -25.10) >DroSec_CAF1 16143 99 - 1 ACCAGUGGCAGAAUCUUGUAGGAUUCCAGGCAAUAUGGUGGAAUUUUCUAUGGGAUUUAGCAUAGAGGAGAUAGGCUUUCUUUGGAUUCUAGAUGGA-UU .(((...((.((((((..((((((((((..........)))))))..)))..)))))).)).((((((((......)))))))).........))).-.. ( -26.30) >DroSim_CAF1 16414 99 - 1 ACCAGUGGCAGAAUCAUGUAGGAUUCCAGGCAAUAUGGUGGAAUUUUCUAUUGGAUUUAGCAACGAGGAGAUAGGCUUUCUUUGGAUUCUAGAUGGA-UU .(((...((.(((((..(((((((((((..........)))))))..))))..))))).))..((((((((.....)))))))).........))).-.. ( -23.20) >DroEre_CAF1 19555 100 - 1 ACGAGUUGCAGAAUCUUGAAGGAUUCCAGGCAUUUUGGUGGGAUUUCAUAUGGGAUUUAGCAUAGAAGAGAUGUGAUUCCUAGGAGAUCAAGCUGCAGUU .((((.(((.((((((....))))))...))).))))((..((((((...(((((....((((.......))))...))))).))))))..))....... ( -28.40) >consensus ACCAGUGGCAGAAUCUUGAAGGAUUCCAGGCAAUAUGGUGGAAUUUUAUAUGGGAUUUAGCAUAGAGGAGAUAGGAUUUCUAUGGAUUCUAGAUGGA_UU .......((.((((((((((((((((((..........)))))))..))))))))))).))....................................... (-13.85 = -14.47 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:30 2006