Locus 2224

Sequence ID 2L_DroMel_CAF1
Location 6,018,153 – 6,018,250
Length 97
Max. P 0.736720
window3572

overview

Window 2

Location 6,018,153 – 6,018,250
Length 97
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 78.59
Mean single sequence MFE -21.61
Consensus MFE -10.61
Energy contribution -11.08
Covariance contribution 0.47
Combinations/Pair 1.11
Mean z-score -2.19
Structure conservation index 0.49
SVM decision value 0.44
SVM RNA-class probability 0.736720
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6018153 97 - 22407834
GUGUGCACUUGCAGCGCCAA-UAAAACUGAUCAAAGCUAA------------------UCAGAUAUUGCGAUUUGUCAAUCAUUCUGCAUUCUUUCCAUGGAAAUAUGCAGGAUCU
((((((....))).)))(((-((...(((((........)------------------)))).))))).((((....))))(((((((((..((((....)))).))))))))).. ( -23.60)
>DroPse_CAF1 6350 110 - 1
------UUUUUCACGAAAAAUCACGAAUGAUCAAAGCUAAUCAUUCGAACAUAUCCAAUCAUAUUUCCCGAUAUGCCAAUCACUCGGCAUUCCAUUCUCGGCAAUCUUCAGGAUAU
------.................((((((((........))))))))...((((((........((.((((.(((((........))))).......)))).))......)))))) ( -21.44)
>DroSec_CAF1 4873 91 - 1
------ACUUGCAGCGCCAA-UAAAACUGAUCAAAGCUAA------------------UCAGAUAUUGCGAUUUGUCAAUCAUUCUGCAUUCUUUCCACGGAAAUAUGCAGGAUCU
------..(((((.(((.((-((...(((((........)------------------)))).)))))))...)).)))..(((((((((..((((....)))).))))))))).. ( -21.80)
>DroSim_CAF1 4872 91 - 1
------ACUUGCAGCGCCAA-UAAAACUGAUCAAAGCUAA------------------UCAGAUAUUGCGAUUUGUCAAUCAUUCUGCAUUCUUUCCACGGAAAUAUGCAGGAUCU
------..(((((.(((.((-((...(((((........)------------------)))).)))))))...)).)))..(((((((((..((((....)))).))))))))).. ( -21.80)
>DroEre_CAF1 4897 94 - 1
AUGUGCACUUCCAGCGCCAA-UAAAACUGAUCAAAGCUAA------------------UCAGAUAUUGCGAUUUGUCAAUCAUUCUGCAU---UUUCUCGGAAAUAUGCAGGAUCU
..((((.......))))(((-((...(((((........)------------------)))).))))).((((....))))(((((((((---((((...)))).))))))))).. ( -19.80)
>DroYak_CAF1 5009 97 - 1
AUGUGCACUUCCAGCGCCAA-UAAAACUGAUCAAAGCUAA------------------UCAGAUAUGGCGAUUUGUCAAUCAUUCUGCAUUCUUUUCUCGGAAAUAUGCAGGAUCU
...((.((......(((((.-.....(((((........)------------------))))...)))))....))))...(((((((((..((((....)))).))))))))).. ( -21.20)
>consensus
______ACUUGCAGCGCCAA_UAAAACUGAUCAAAGCUAA__________________UCAGAUAUUGCGAUUUGUCAAUCAUUCUGCAUUCUUUCCACGGAAAUAUGCAGGAUCU
............................((((...........................(((((......))))).........((((((...(((....)))..)))))))))). (-10.61 = -11.08 +   0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:29 2006