| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,011,227 – 6,011,327 |
| Length | 100 |
| Max. P | 0.785902 |
| Location | 6,011,227 – 6,011,327 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 80.79 |
| Mean single sequence MFE | -35.48 |
| Consensus MFE | -25.67 |
| Energy contribution | -25.98 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.785902 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6011227 100 + 22407834 -AGUGCGGUGCACUUUUGGGGGUUGGACA--CCGAUUUCUGUGCACCACGCUACUCCGCGCAGUUUGUUUUGGGUUUUGUUGGAAAAC-------------UCUAAGGACGCCCGA -..((((((((((....((..(((((...--)))))..)))))))))..((......))))).......((((((.((.(((((....-------------))))).)).)))))) ( -38.10) >DroPse_CAF1 97481 101 + 1 -GGUCGGGU-------UCGGGUUCGGACU--CGGAUGUCCUUGCGA-GGGUUGUUU----CGGUUUGUUUUGGGUUUUGUUUUAAGACAGGAGUUUGCCGCUUCAAGAAAGUUUGG -..((((((-------(((....))))))--))).....((((.((-((((...((----(...((((((((((......)))))))))))))...))).)))))))......... ( -26.60) >DroSec_CAF1 67275 100 + 1 -AGUGCGGUGCACUUUUGGGGGUUGGACA--CCGAUUUCUGUGCACCACGCUGCUCCGCGCAGUUUGUUUUGGGUUUUGUUGGAAAAC-------------UCUAAGGACGCUCGA -((((.(((((((....((..(((((...--)))))..))))))))).))))....((.((.((((.....(((((((.....)))))-------------))...)))))).)). ( -36.30) >DroSim_CAF1 67914 100 + 1 -AGUGCGGUGCACUUUUGGGGGUUGGACA--CCGAUUUCUGUGCACCACGCUACUCCGCGCAGUUUGUUUUGGGUUUUGUUGGAAAAC-------------UCUAAGGACGCUCGA -((((.(((((((....((..(((((...--)))))..))))))))).))))....((.((.((((.....(((((((.....)))))-------------))...)))))).)). ( -36.30) >DroEre_CAF1 72079 103 + 1 GAGUGCGGUGCACUUUUGGGGGUUGGACACACCGAUUUCUGUGCACCACGCUACUCCGCGCAGUUUGUUUUGGGUUUUGUUGGAAAAC-------------UCUAAGGACGCUCGA .((((.(((((((....((..(((((.....)))))..))))))))).))))....((.((.((((.....(((((((.....)))))-------------))...)))))).)). ( -37.90) >DroYak_CAF1 71689 102 + 1 -AGUGCGGUGCACUUUUGGGGGUUGGACACGCCGAUUUCUGUGCACCACGCUACUCCGCGCAGUUUGUUUUGGGUUUUGUUGGAAAAC-------------UCUAAGGACGCUCGA -((((.(((((((....((..(((((.....)))))..))))))))).))))....((.((.((((.....(((((((.....)))))-------------))...)))))).)). ( -37.70) >consensus _AGUGCGGUGCACUUUUGGGGGUUGGACA__CCGAUUUCUGUGCACCACGCUACUCCGCGCAGUUUGUUUUGGGUUUUGUUGGAAAAC_____________UCUAAGGACGCUCGA .((((.(((((((....((..(((((.....)))))..))))))))).)))).................((((((.((.(((((.................))))).)).)))))) (-25.67 = -25.98 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:28 2006